Hello, I am trying to create ROI from FS parcellation and extract z-values from it. Steps 1 and 2 works. Step 3 gives me error message (core dumped): wb_command -cifti-create-dense-from-template 100307_zstat1.dtseries.nii 14035rois_subcort_ACCUMBENS_RIGHT_f.dscalar.nii -cifti 14035rois_subcort_ACCUMBENS_RIGHT.dscalar.nii /usr/local/pkg/workbench1.2.3/bin_rh_linux64/wb_command: line 15: 32654 Segmentation fault (core dumped) "$directory"/../exe_rh_linux64/wb_command "$@" Can somebody tell me what is wrong?
## 1} Convert subcortical MNI ROIs to CIFTI wb_command -cifti-create-label 14035rois_subcort.dlabel.nii -volume Atlas_ROIs.2.nii.gz Atlas_ROIs.2.nii.gz ## 2} Select ACCUMBENS_RIGHT and create ROI for it wb_command -cifti-label-to-roi 14035rois_subcort.dlabel.nii 14035rois_subcort_ACCUMBENS_RIGHT.dscalar.nii -name ACCUMBENS_RIGHT ## 3} Match ROI dimensions to z-stat dimensions wb_command -cifti-create-dense-from-template 100307_zstat1.dtseries.nii 14035rois_subcort_ACCUMBENS_RIGHT_f.dscalar.nii -cifti 14035rois_subcort_ACCUMBENS_RIGHT.dscalar.nii ## 4} Extract values from ROI wb_command ‐cifti‐stats 100307_zstat1.dtseries.nii ‐reduce MEAN ‐roi 14035rois_subcort_ACCUMBENS_RIGHT_f.dscalar.nii Best regards, Serguei Astafiev Department of Psychiatry Washington University School of Medicine Campus Box 8134, 660 S. Euclid Ave, St. Louis, MO 63110 Phone: (314) 286-2205 FAX: (314) 286-0091 E-mail: astaf...@wustl.edu<mailto:astaf...@wustl.edu> The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
