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On Fri, Aug 15, 2014 at 7:49 PM, 胡瑞 <huruid...@gmail.com> wrote:

> I mean i don't know how to start to read. i connect your trunk address
> through svn, but there are many files.
>
>
> 2014-08-16 8:36 GMT+08:00 胡瑞 <huruid...@gmail.com>:
>
> OH I will not change anything on your original source code, but firstly, i
>> need test and understand jmol runing way, if i will start modify offically
>> i will extend your Class, modify original code is really bad way :(
>> Sir i am a new programmer, i don't know how to read your svn file, Could
>> you give me some advice
>> Thank you very much
>>
>>
>> 2014-08-16 8:15 GMT+08:00 Robert Hanson <hans...@stolaf.edu>:
>>
>> ps -- make sure you are checking out
>>> svn.code.sf.net/p/jmol/code/trunk/Jmol
>>>
>>>
>>> On Fri, Aug 15, 2014 at 7:14 PM, Robert Hanson <hans...@stolaf.edu>
>>> wrote:
>>>
>>>> It sounds like you are a new contributor to Jmol. Terrific! We could
>>>> use someone who wants to make the Gaussian input dialog better. No one has
>>>> worked on that for a long time. Before you go too far on your own, though,
>>>> why not request features? It would be unwise to start changing the code in
>>>> Viewer, especially, because I regularly work on that, and what I do may
>>>> break what you do. And you may not think of the implications something has,
>>>> the way I can if I help you.
>>>>
>>>> I just checked in a much more interesting Gaussian input dialog. I hope
>>>> you like it.
>>>>
>>>> Note that:
>>>>
>>>>  -- tabs are gone; "advanced" simply right side of a JSplitPane
>>>>  -- refresh button is new; cancel button is now "close"
>>>>  -- when you use the model kit to modify the structure, the input file
>>>> is updated
>>>>  -- when you click on an atom, that atom is selected and highlighted on
>>>> the input file
>>>>  -- when you click on a line in the input file, the atom is highlighted
>>>>  -- when you change input parameters, the input file is updated
>>>>  -- when you load a new model, the input file is updated
>>>>
>>>> Bob
>>>>
>>>>
>>>> On Fri, Aug 15, 2014 at 6:21 PM, 胡瑞 <huruid...@gmail.com> wrote:
>>>>
>>>>> Oh, sir I find there is a assignAtom function which allocate in the
>>>>> ModelSet Class(Figure 1)
>>>>> i fund two method will call this function, as i say in the photo there
>>>>> are all in the script package, but i just click gui and i don't input any
>>>>> script command. Am i going a right way ?
>>>>>
>>>>>
>>>>> 2014-08-16 5:48 GMT+08:00 胡瑞 <huruid...@gmail.com>:
>>>>>
>>>>> Thank you sir, i had saw those documents which use by script, That
>>>>>> script just show me how to operate it. However, i need to modify jmol 
>>>>>> java
>>>>>> source code and add a new function, i have a simple demo (Figure1). That
>>>>>> function will provide many possible options to user to choice.  But how 
>>>>>> to
>>>>>> recored user choice? Recoding index of element is very important.I still
>>>>>> can't find the core function in the jmol opensource,Could you tell me the
>>>>>> point of package and core class?
>>>>>> Jmol sourse code is a huge project, i spend one month on this
>>>>>> opensource code, many of them i can understand , some of them look so
>>>>>> complicated.
>>>>>>
>>>>>>
>>>>>>
>>>>>> 2014-08-16 5:06 GMT+08:00 Robert Hanson <hans...@stolaf.edu>:
>>>>>>
>>>>>>>  Dear 胡瑞
>>>>>>>
>>>>>>> see below
>>>>>>>
>>>>>>> [translation]
>>>>>>> It is great to know that you have a Chinese team [to understand my
>>>>>>> point in Chinese]. Maybe I had not expressed myself well. I am student 
>>>>>>> at
>>>>>>> University of New Haven, and my supervisor has asked me to add a new
>>>>>>> functionality on top of Jmol. Did you remember that Jmol has a menu item
>>>>>>> for "Export Gaussian Input file"? The "advance" option can record the 
>>>>>>> data
>>>>>>> on display. When I add element at the main menu, I must first switch [to
>>>>>>> the submenu?] to change options in "advance". When I add a new 
>>>>>>> structure,
>>>>>>> my results are sorted in order by default (see Figure 1, where the 2nd C
>>>>>>> should be at the 5th position) . How do I get the data in original 
>>>>>>> order?
>>>>>>>
>>>>>>> The second question is how to record which element is clicked by a
>>>>>>> user. This info is useful to restore to the previous state. I am not
>>>>>>> familiar with scripting languages. However, browsing the source code 
>>>>>>> shows
>>>>>>> me that many functionalities are achieved by filtering strings, which is
>>>>>>> quite general strategy. I wish your team could provide a detailed
>>>>>>> documentation. There is very limit such info on the Internet. I need to
>>>>>>> know in detail the functionality of each class.
>>>>>>> [/translation]
>>>>>>>
>>>>>>> Order: There is no order sorting. The order is file order. But I see
>>>>>>> what you mean. There is a bug there, and I will look into it. I like the
>>>>>>> idea very much of being able to edit the model and see changes in the
>>>>>>> Gaussian advanced tab. Is that what you are interested in?  I have never
>>>>>>> thought of doing that.
>>>>>>>
>>>>>>> Documentation for scripting is at
>>>>>>> http://chemapps.stolaf.edu/jmol/docs  There is probably no need to
>>>>>>> do any actual Java programming -- you can do a lot with Jmol scripting. 
>>>>>>> For
>>>>>>> example, you can run your own functions whenever atoms are clicked. 
>>>>>>> Look up
>>>>>>> information on "callbacks"
>>>>>>> http://chemapps.stolaf.edu/jmol/docs/?search=callback
>>>>>>>
>>>>>>> No promises I can continue in Chinese -- do try English! :)
>>>>>>>
>>>>>>> Bob Hanson
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> ------------------------------------------------------------------------------
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Jmol-developers mailing list
>>>>>>> Jmol-developers@lists.sourceforge.net
>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>>>>>>>
>>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> ------------------------------------------------------------------------------
>>>>>
>>>>> _______________________________________________
>>>>> Jmol-developers mailing list
>>>>> Jmol-developers@lists.sourceforge.net
>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> Robert M. Hanson
>>>> Larson-Anderson Professor of Chemistry
>>>> Chair, Department of Chemistry
>>>> St. Olaf College
>>>> Northfield, MN
>>>> http://www.stolaf.edu/people/hansonr
>>>>
>>>>
>>>> If nature does not answer first what we want,
>>>> it is better to take what answer we get.
>>>>
>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>
>>>>
>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Larson-Anderson Professor of Chemistry
>>> Chair, Department of Chemistry
>>> St. Olaf College
>>> Northfield, MN
>>> http://www.stolaf.edu/people/hansonr
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
>>>
>>>
>>> ------------------------------------------------------------------------------
>>>
>>> _______________________________________________
>>> Jmol-developers mailing list
>>> Jmol-developers@lists.sourceforge.net
>>> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>>>
>>>
>>
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-- 
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Department of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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