On 100816M, at 04:44, Dan Staines wrote:
Hi Gabriel,
2. Where did the following datasets go?
aaegypti_gene_ensembl
agambiae_gene_ensembl
athaliana_gene_ensembl
They are not in any of the marts listed in response to
http://uswest.ensembl.org/biomart/martservice?*type=registry*
The Ensembl databases and corresponding marts for these organisms are
now provided by the Ensembl Genomes group (and in the case of A.
thaliana, by our colleauges at Gramene as well) - Ensembl Genomes is
now
responsible for providing ensembl resources for non-vertebrate
organisms, including plants and metazoa. For various reasons, this has
necessitated a change in dataset name to be aaegypti_eg_gene,
agambiae_eg_gene and athaliana_eg_gene, and can be found via the mart
installs at the individual Ensembl Genomes sites e.g.:
http://plants.ensembl.org/biomart/martview
http://metazoa.ensembl.org/biomart/martview
Thanks for the info!
G.
=============================================================
Gabriel F. Berriz, PhD
Senior Bioinformatics Developer
Roth Lab
Biological Chemistry and Molecular Pharmacology -- Harvard Medical
School
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Telephone: 617.432.3555
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