Hyphy the R package can do what u need On Dec 18, 2016 4:26 AM, "Liam J. Revell" <liam.rev...@umb.edu> wrote:
> Hi John. > > I believe this used to be possible using the package phybase. > Unfortunately, this package was not being maintained & was removed from > CRAN - however archived package versions can still be obtained (so it may > be possible to install from source). > > All the best, Liam > > Liam J. Revell, Associate Professor of Biology > University of Massachusetts Boston > web: http://faculty.umb.edu/liam.revell/ > email: liam.rev...@umb.edu > blog: http://blog.phytools.org > > On 12/18/2016 7:22 AM, john d wrote: > >> Dear colleagues, >> >> I'm looking for an R package that will simulate gene trees onto a given >> species tree and a value of theta. I tried TreeSim, but it would use a >> provided tree as input. >> >> I know that DendroPy does that, but I'd prefer using R. >> >> Thanks! >> >> Carlos >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> R-sig-phylo mailing list - R-sig-phylo@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-phylo >> Searchable archive at http://www.mail-archive.com/r- >> sig-ph...@r-project.org/ >> >> > _______________________________________________ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at http://www.mail-archive.com/r- > sig-ph...@r-project.org/ > [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
