Hi there, treespace would be an alternative, but its usefulness for 5 trees will be quite limited. Just in case: https://github.com/thibautjombart/treescape
Cheers Thibaut -- Dr Thibaut Jombart Lecturer, Department of Infectious Disease Epidemiology, Imperial College London Head of RECON: repidemicsconsortium.org sites.google.com/site/thibautjombart/ github.com/thibautjombart Twitter: @TeebzR +44(0)20 7594 3658 On 25 April 2017 at 18:20, Vojtěch Zeisek <vo...@trapa.cz> wrote: > Hello, > for comparison of two trees I can use very nice function cophyloplot plotting > two trees (left and right) and connecting respective nodes by lines. Very nice > and convenient to read. But only for two trees. Displaying multiple trees in > multiple comparisons is not very convenient. > To display dozens to hundreds of trees there is densitree. Also nice, but for > this purpose I don't like its display. > I have several trees (~5) and I wish to compare their topologies, show > supports (at least for differing nodes) and highlight differences. I thought > about some overlay/parallel plotting (similar to the attached image) where > there would be complete topologies displayed and incongruences would be easily > visible. It would be probably doable by plotting all separate trees by > plot.phylo and then combining and tuning the figure in some vector editor > (like Inkscape). But I hope there is some more automated way to do it. :-) > Sincerely, > V. > > -- > Vojtěch Zeisek > https://trapa.cz/en/ > > Department of Botany, Faculty of Science > Charles University, Prague, Czech Republic > https://www.natur.cuni.cz/biology/botany/ > > Institute of Botany, Czech Academy of Sciences > Průhonice, Czech Republic > http://www.ibot.cas.cz/en/ > > _______________________________________________ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
