Hi,
I am trying to set up a GMOD chado database to read/write using Artemis. I
admit not being a very experienced database user, so maybe I am missing
something obvious. Anyway.
I start Artemis using
art -Dchado=localhost:5432/annotation?bjorns
-Djdbc.drivers=org.postgresqlver -Dibatis
Hi Björn
I have just added some documentation that describes loading in two examples
one of these is the one you have used (NC_008783):
http://www.sanger.ac.uk/Software/Artemis/v11/chado/dbloading.shtml
I did not experience the problem you seem to have with feature types.
However I had to
Hi Malcolm
I think the normal trick is to create a single fasta from Artemis by
File-Write-All Bases-FASTA format. This then gets them on the correct
coordinate system for your query.
The GFF multiple contig thing is a problem. It only really copes with a
single sequence. I haven't loaded GFFs
