Hi Nicklas,
I guess the MageTab export plugin is ready for submission. I followed
instructions for plugin developers
(http://baseplugins.thep.lu.se/wiki/PluginSubmitReq), so all the
documentation bits should be in place. How could I send you the bundle?
Would you provide a repository dir to
pooling of samples (or extracts) and the possibility to have
several Files[raw] per RawBioAssay (ex : one cy3 and one cy5)
because we used nimblegen multi-color arrays.
Are you plan to manage that feature ?
Gildas
Le 01/09/2011 14:43, Pawel Sztromwasser a écrit :
Hallo,
I haven't been
Hallo,
I haven't been to the milestones page for a while, and I didn't know
that work on BASE 3 was in such an advanced state. Great job guys!
Support for sequencing data is excellent news for us.
Anyway, before it is released and before we are ready to migrate, we
will certainly have
was wondering if
anyone else is developing or planning to develop a plugin that would
support Mage-Tab?
Regards,
Pawel Sztromwasser
attachment: pawel_sztromwasser.vcf--
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In BASE it was a Tomcat problem. Hope it helps:
http://www.mail-archive.com/basedb-users@lists.sourceforge.net/msg01838.html
Pawel
attachment: pawel_sztromwasser.vcf--
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), so an
environment that a BASE administrator should have full control over. The
same as external authentication plugins.
Pawel
Nicklas Nordborg wrote:
On 2011-07-26 22:47, Pawel Sztromwasser wrote:
Hello BASE team!
Extending a little on our recent developments regarding external
See my short replies inline.
Nicklas Nordborg wrote:
On 2011-08-01 10:51, Pawel Sztromwasser wrote:
Hi Nicklas,
Thanks for the suggestions. Maybe I am missing something but wouldn't
it be possible to send the username and password to the STS as part of
the BASE login? Or, use
Sorry, just noticed that you mentioned the
...basedb.util.JarClassLoader, not a regular Java class loader as I
initially thought.
On 01/02/11 13:17, Pawel Sztromwasser wrote:
Thanks for a quick reply. I really wanted to avoid selecting jars and so
on since BASE has over 50 of them, and maven
Hello,
We have been exporting some experiments lately to ArrayExpress and
noticed that protocols need to have their own ArrayExpress IDs.
Currently we have to add them manually to export file generated in BASE
(Tab2MageExporter), but it would be fairly easy to have it done
automatically by
if there is already an image with the
specified file.
Is there a need for setting the other image properties (preview, format,
description)?
If so, it might be better to have a specific importer for images.
/Nicklas
Pawel Sztromwasser wrote:
Hello BASE team,
We really enjoy the set
Hello BASE team,
We really enjoy the set of batch uploading plugins and were doing a
little training for our users in Bergen. Everything seemed great except
that they couldn't link freshly created scans with image files. I read
in the example spreadsheet that it is not supported and was very
I have just noticed that the filename I sent has different name then the
class inside. I used ScanImporterNMC name to distinguish from the
original plugin and then renamed the file before sending. Just rename it
back and all will work.
Pawel
Pawel Sztromwasser wrote:
Hello BASE team,
We
We experienced that as well. I believe that I have checked these probes
and they were controls, so they can be ignored.
Pawel
Nicklas Nordborg wrote:
David Waring wrote:
I have recently installed the Illumina Plugins and have imported
features for several Array Designs. We modified our
Hello,
I found something interesting regarding BASE2 performance on Postgres
(we have 8.3 but I suppose it is valid for previous versions as well).
Recently I was unable to delete ArrayDesign (Illumina Human 8Ref, no
items connected to it, features imported), because database query was
, String service,
RPCServiceClientCreator serviceCreator)
{
...
}
/Nicklas
Pawel Sztromwasser wrote:
Hi Nicklas,
I had some time and implemented the 'ServiceFactory' functionality.
Gzipped java files are attached. To summarize changes:
1) three new classes/interfaces were created (I
version and 2.7.1. Just thought,
it might be helpful.
I hope the code will be useful.
Best wishes,
Pawel
Nicklas Nordborg wrote:
Pawel Sztromwasser wrote:
Hello BASE developers,
We have been recently trying to enable retrieving some data from
BASE2 installation directly into our 'home made
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