. I'm
on an intel mac running 10.6.8, with
Coot 0.7-pre-1 (revision
3628). Bug?
Thanks,
Jon
--
Edwin Pozharski, PhD
University of
Maryland, Baltimore
Whatever the rationale was, there is a structure in the PDB that has
alternate conformer of a residue listed with different residue type - A is
arginine and B is glutamine. Coot fails to load the model complaining in
the command window
WARNING:: Error reading small-molecule cif
s...@mrc-lmb.cam.ac.uk>
wrote:
> On 31/01/17 17:54, Edwin Pozharski wrote:
>
> Whatever the rationale was, there is a structure in the PDB that has
> alternate conformer of a residue listed with different residue type - A is
> arginine and B is glutamine. Coot fails to load the model co
edu>
wrote:
> On Thursday, 10 November, 2016 14:01:01 Edwin Pozharski wrote:
> > This is an ugly hack, but here goes
>
> [...]
>
>
> Wouldn't it be cleaner to wrap coot in a script that either
> - resets $HOME to a directory that doesn't hold the .CCP4 folder
> - uses
This is an ugly hack, but here goes:
1. Prior to opening coot, rename you .CCP4 folder. (bash: mv .CCP4
.CCP4_hidden)
2. Open coot. Do what you need to do.
3. Close coot.
4. Restore .CCP4 folder (bash: mv .CCP4_hidden .CCP4)
You can make a shortcut by putting this into your .bashrc
I had an opportunity to build coot executable on a fresh ubuntu box. It
compiles fine after you install few dependencies but I noticed the
following:
1) it seems that coot won't work without CCP4. It won't load mtz files -
complained that the map file wasn't proper format.
2) Even after I
Is there currently a way to auto-run the sphere refine on full sequence
(similarly to stepped refine option, preferably with an option to enforce
Ramachandran)? If not, are there plans to add such feature? Is there some
fundamental objection to such feature?
Thanks
---
Coot verendus est
https://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/web/docs/coot.html#Place-Helix
On Tue, Jan 29, 2019 at 3:09 PM Ahmad Khalifa
wrote:
> Hello,
>
> I'm a new user of Coot. I have a density that has the shape of a helix. I
> sort of have an idea of what sequence should go in there, but I
I believe "bonds colour by chain" option in display manager does color
chains differently.
On Wed, Dec 25, 2019, 12:06 PM Ahmad Khalifa wrote:
> I want to either color chains of the same structure differently, or turn
> on environmental distances between molecules (which I can color
>
