Re: [COOT] Coot crashing after "Add OXT terminal" revision 6498

2016-12-02 Thread Paul Emsley
On 30/11/2016 10:25, Folmer Fredslund wrote: As was mentioned, there were some problems with COOT and mutations after a recent CCP4 update. I've seen crashes after "Add OXT to Residue..." (from Calculate->Other Modelling Tools) in revision 6498 provided by CCP4-7.0 (update 24), but I don't see

[COOT] stuck with black fonts

2016-12-02 Thread Andrea PICA
Hi everybody, I am using coot (version 0.8.1) on a linux debian system. Atom labels are shown in black and on a black background this is not ideal. Unfortunately changing the color in Edit>Preferences>Others>Fonts doesn't seem to work (color is always black even if I select a different one).

Re: [COOT] stuck with black fonts

2016-12-02 Thread Folmer Fredslund
Dear Andrea, I would suggest, if at all possible, to use a more recent version of coot, or at least test it. 0.8.1 is almost 2 years old, and the new ones are available for debian as tar files here: http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/ Even if you are not an administrator on

Re: [COOT] stuck with black fonts

2016-12-02 Thread Paul Emsley
Quite Right Folmer, I am pretty sure that this was fixed in 0.8.2: Release Notes has this item: o BUG-FIX: Resetting of Own font colour on opening the preferences dialog fixed. Paul. On 02/12/2016 10:45, Folmer Fredslund wrote: Dear Andrea, I would suggest, if at all

Re: [COOT] pre-proline peptide restraints

2016-12-02 Thread wtempel
Hello, I am again struggling with a similar problem and have only (re?-)discovered Paul's May 23 reply today. Thus, I pushed that " Trans>" button and, yes, I now can still recognize the proline after real-space refinement. But the COOT planar restraints for the cis-peptide appear to be much

Re: [COOT] pre-proline peptide restraints

2016-12-02 Thread Paul Emsley
Oh Wolfram, you top-poster, you..! On 02/12/2016 17:25, wtempel wrote: I am again struggling with a similar problem and have only (re?-)discovered Paul's May 23 reply today. Thus, I pushed that " Trans>" button and, yes, I now can still recognize the proline after real-space refinement. But