Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-26 Thread Glasser, Matthew
t;" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>, "Brown, Tim" <tbbr...@wustl.edu<mailto:tbbr...@wustl.edu>> Subject: Re: [HCP-Users] hcp_fix.for_fix1.06a Hi Matt, Great, thanks. I was able to use the multi-run ICA+FIX with MELODIC from F

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-26 Thread Yeun Kim
<glass...@wustl.edu> > Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > Subject: Re: [HCP-Users] hcp_fix.for_fix1.06a > > To follow up, which script should I work with? hcp_fix_multi_run > or hcp_fix_multi_run.original? > > Thanks,

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-21 Thread Glasser, Matthew
ss...@wustl.edu<mailto:glass...@wustl.edu>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] hcp_fix.for_fix1.06a To follow up

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-21 Thread Yeun Kim
; Matt. >> >> From: Yeun Kim <yeun...@gmail.com> >> Date: Thursday, July 20, 2017 at 4:33 PM >> >> To: Matt Glasser <glass...@wustl.edu> >> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> >> Subject: Re:

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-21 Thread Yeun Kim
ix_multi_run might be helpful. > > Matt. > > From: Yeun Kim <yeun...@gmail.com> > Date: Thursday, July 20, 2017 at 4:33 PM > > To: Matt Glasser <glass...@wustl.edu> > Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > Subject: Re:

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-20 Thread Glasser, Matthew
ss...@wustl.edu<mailto:glass...@wustl.edu>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] hcp_fix.for_fix1.06a I've been creating the preprocess

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-20 Thread Yeun Kim
Peace, > > Matt. > > From: Yeun Kim <yeun...@gmail.com> > Date: Wednesday, July 19, 2017 at 7:20 PM > > To: Matt Glasser <glass...@wustl.edu> > Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > Subject: Re: [HCP-Users] hcp_fix.for

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-19 Thread Glasser, Matthew
nnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] hcp_fix.for_fix1.06a Latest release meaning 5.0.10? Or were the modifications implemented in previous releases/patches (in 5.0.9)?

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-19 Thread Yeun Kim
sser <glass...@wustl.edu> > Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > Subject: Re: [HCP-Users] hcp_fix.for_fix1.06a > > In the script ICAFIX/hcp_fix.for_fix1.06a, it uses the modified version of > melodic: > > Debug "Modified version of

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-19 Thread Glasser, Matthew
u>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] hcp_fix.for_fix1.06a In the script ICAFIX/hcp_fix.for_fix1.06a, it uses the modified version of melodi

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-19 Thread Yeun Kim
In the script ICAFIX/hcp_fix.for_fix1.06a, it uses the modified version of melodic: Debug "Modified version of melodic in use" Debug "melodic located at: ${HOME}/pipeline_tools/fix1.06a/melodic used" Debug "instead of melodic located at: ${FSLDIR}/bin/melodic" Debug "Beginning of melodic version

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-19 Thread Glasser, Matthew
What is this in reference to? Peace, Matt. From: > on behalf of Yeun Kim > Date: Wednesday, July 19, 2017 at 7:04 PM To: