Re: [PyMOL] (small) Pymol feature request--filter for edit settings window

Hello Michelle, You can also edit the SetEditor.py file. The file is in the '/usr/lib/python2.3/site-packages/pmg_tk' directory on linux and add the feature. It can be done by adding to small portion of add-on code to the file. If you do so: Keep a copy of the original file in a safe place !

Re: [PyMOL] (small) Pymol feature request--filter for edit settings window

Hello Michelle, You can also edit the SetEditor.py file. The file is in the '/usr/lib/python2.3/site-packages/pmg_tk' directory on linux and add the feature. It can be done by adding to small portion of add-on code to the file. If you do so: Keep a copy of the original file in a safe place !

Re: [PyMOL] mutations

I follow the method outlined by Nick with one additional step, after selecting the new residue you can run through a sidechain rotamer library using the forward arrows at the bottom of the window. You also have a choice to use backbone dependant or backbone independant rotamers. Andrew On

Fw: [PyMOL] translation

orla, not actually had to do this, but I think you can try the translate command. -- translate DESCRIPTION translate can be used to translate the atomic coordinates of a molecular object. Behavior differs depending on whether or not the

Re: [PyMOL] ..and rotate

orla, If in fact you actually have to move molecules independently using the 'dirty' method that I have suggested, you will probably need the rotate command too, for more flexibility in setting things up. rotate DESCRIPTION rotate can be used

RE: [PyMOL] importing pymol modules in a python script

Alan, The only sure way to get this to work is to build into a local Python interpreter from PyMOL source code using distutils. Otherwise, you're likely better off with pymol -qc Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC .

Re: [PyMOL] pymol transitions recorded as movie?

Hi Eva, If you save your scenes (conformations) as a psw file (under save as) you can then use a hyperlink in powerpoint and this will launch pymol in presentation mode and you can just use page down to scroll through the scenes. Pymol is still active so you can rotate the molecules in the

Re: [PyMOL] a scaling question

Hi Fei, * Fei Xu f...@rutchem.rutgers.edu [2006-04-19 11:55] wrote: Hi!: I met a scaling problem. I created many pdb files along one trajectory of DNA movement. I loaded each pdb file in pymol to create a picture, that is, one frame of the trajectory. Pymol shows each molecule in an optimal