MSBuild 4.0 x64 uses the 32-bit path for both $(MSBuildExtensionsPath32) and 
$(MSBuildExtensionsPath), so it should be picking up the right file.
What are the specific errors you are getting?

> From: mathew.skil...@aspect.com
> To: wix-users@lists.sourceforge.net
> Date: Tue, 27 Aug 2013 16:38:03 +0000
> Subject: Re: [WiX-users] 64 bit version of MS build cannot find the WIX 
> toolset
> 
> All  of the WIX projects in question have those lines in place:
> 
>     <WixTargetsPath Condition=" '$(WixTargetsPath)' == '' AND 
> '$(MSBuildExtensionsPath32)' != '' 
> ">$(MSBuildExtensionsPath32)\Microsoft\WiX\v3.x\Wix.targets</WixTargetsPath>
>     <WixTargetsPath Condition=" '$(WixTargetsPath)' == '' 
> ">$(MSBuildExtensionsPath)\Microsoft\WiX\v3.x\Wix.targets</WixTargetsPath>
> 
> I just realized that forgot to mention I was using the .Net 4.0 version of MS 
> Build.
> 
> MAT SKILDUM
> SR PRINCIPAL ENGINEER
> +1 (630) 227.8534 WORK
> +1 (847) 909.9921 MOBILE
> mathew.skil...@aspect.com
> aspect.com
> 
> 
> 
> 
> -----Original Message-----
> From: John Cooper [mailto:jocoo...@jackhenry.com] 
> Sent: Tuesday, August 27, 2013 11:05 AM
> To: General discussion for Windows Installer XML toolset.
> Subject: Re: [WiX-users] 64 bit version of MS build cannot find the WIX 
> toolset
> 
> How far back do you wixproj files go?  Modern ones should have something like:
> 
> &lt;WixTargetsPath Condition=" '$(WixTargetsPath)' == '' AND 
> '$(MSBuildExtensionsPath32)' != '' 
> "&gt;$(MSBuildExtensionsPath32)\Microsoft\WiX\v3.x\Wix.targets&lt;/WixTargetsPath&gt;
> &lt;WixTargetsPath Condition=" '$(WixTargetsPath)' == '' 
> "&gt;$(MSBuildExtensionsPath)\Microsoft\WiX\v3.x\Wix.targets&lt;/WixTargetsPath&gt;
> 
> Older files don't have both lines causing things to fail on x64 systems.
> 
> --
> John Merryweather Cooper
> Build & Install Engineer -- ESA
> Jack Henry & Associates, Inc.(r)
> Shawnee Mission, KS  66227
> Office:  913-341-3434 x791011
> jocoo...@jackhenry.com
> www.jackhenry.com
> 
> 
> 
> 
> -----Original Message-----
> From: Skildum, Mathew [mailto:mathew.skil...@aspect.com]
> Sent: Tuesday, August 27, 2013 10:44 AM
> To: General discussion for Windows Installer XML toolset.
> Subject: Re: [WiX-users] 64 bit version of MS build cannot find the WIX 
> toolset
> 
> I am using WIX 3.8 (build 3.8.708).  The build system is using the GA version 
> of WIX 3.7.
> 
> I am havine issues on both systems.
> 
> -----Original Message-----
> From: Blair Murri [mailto:os...@live.com]
> Sent: Tuesday, August 27, 2013 10:37 AM
> To: General discussion for Windows Installer XML toolset.
> Subject: Re: [WiX-users] 64 bit version of MS build cannot find the WIX 
> toolset
> 
> Which version of WiX are you running? There was a bug a ways back about that.
> > From: mathew.skil...@aspect.com
> > To: wix-users@lists.sourceforge.net
> > Date: Tue, 27 Aug 2013 14:54:30 +0000
> > Subject: [WiX-users] 64 bit version of MS build cannot find the WIX 
> > toolset
> > 
> > I know there is probably a posting somewhere out on the web describing the 
> > issue I am having, but I am not able to find it at the present moment.
> > 
> > The problem I am current having is that the 64 bit version of MS build does 
> > not properly evaluate the build variables and is not able to find WIX 
> > tools.  The 32 bit version works correctly and everything is happy, but 
> > when I switch MS  Build targets everything goes to pot.
> > 
> > Does anyone have a way around this issue or a link to the documentation on 
> > why I am seeing this?  
> > 
> > Thank you in advance,
> > 
> > Mat Skildum
> > 
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