I seldom ask this as I usually work at the level of abstractions.  But
could you please give some examples of topological relationships that
are difficult to express computationally?  I am not sure I follow
exactly what you have in mind. 

Thanks.

- samantha


On 06/16/2015 06:09 PM, J. Andrew Rogers wrote:
>
>> On Jun 16, 2015, at 3:26 PM, Dean Pomerleau <[email protected]
>> <mailto:[email protected]>> wrote:
>> In short, growing evidence supporting the importance of cortical
>> oscillations in neural processing suggests that this sort of
>> analog/digital feedback loop might be critical to how the brain
>> works, and that such interactions might be very hard (possible
>> intractably hard) to model accurately (i.e. emulation vs. merely
>> crude simulation) on a digital computer, in a similar way to how
>> protein folding is intractable to model on a digital computer.   
>
>
> The tractability challenges of computational dynamics for brain-like
> models is related to why we can’t analyze the dynamics of *any*
> non-trivial physical world system. It is not coincidence that all “big
> data” computation focuses solely on relationships in the electronic
> world and not the physical world.
>
> Interestingly, computer scientists rarely notice that these software
> systems do not exist until you point it out. And when you do point it
> out they are at a loss to explain why. It is only “obvious” in hindsight.
>
>
> Virtually all existing computer science is based on the manipulation
> of graph-like data models and primitives. The problem is that some
> systems, notably physical world systems, have relationships that are
> fundamentally topological in nature. Graphs are a special, strict
> subset of more general topological computing representations; it is
> not possible to construct a scalable topological computational model
> on top of graph primitives.
>
> There is no computer science literature for computing on topological
> data models. To the extent algorithms and data structures exist to
> handle basic topological data models (e.g. R-trees), they exhibit
> pathological scalability because they are shoehorned into traditional
> graph models. If you want to compute on topological models at scale,
> you need to build a completely new computer science stack, from the
> most elementary primitives on up. And it needs to have an efficient
> implementation on conventional silicon.
>
>
> If you can directly manipulate topologies as computational constructs,
> instead of graphs only, many types of computational dynamic suddenly
> become *much* more tractable. In practice, the use of inappropriate
> algorithms and data structures to represent topological relationships
> are responsible for most intractability related to expressions of
> physical world system dynamics on a computer. It just never crosses
> the mind of most computer scientists working on such things and it is
> never discussed in computer science curricula.
>
>
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