Hi everybody,

Just a little remark.

I can not use writeDataFrame for CN and for BAF in the same script
because txt file already exists. So I have to create two directories
(or delete txt directory). Is there another solution?

tags <- "ACC,ra,-XY,BPN,-XY,AVG,A+B,FLN,-XY";
chipType <- "GenomeWideSNP_6";
ds1 <- AromaUnitTotalCnBinarySet$byName(dataSet, tags=tags,
dfTxt1 <- writeDataFrame(ds1, columns=c("unitName", "chromosome",
"position", "*"));

tags <- "ACC,ra,-XY,BPN,-XY,AVG,FLN,-XY";
chipType <- "GenomeWideSNP_6";
ds2 <- AromaUnitFracBCnBinarySet$byName(dataSet, tags=tags,
dfTxt2 <- writeDataFrame(ds2, columns=c("unitName", "chromosome",
"position", "*"));

Thank you in advance for your answers,


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