Hi everybody,
Just a little remark.
I can not use writeDataFrame for CN and for BAF in the same script
because txt file already exists. So I have to create two directories
(or delete txt directory). Is there another solution?
tags <- "ACC,ra,-XY,BPN,-XY,AVG,A+B,FLN,-XY";
chipType <- "GenomeWideSNP_6";
ds1 <- AromaUnitTotalCnBinarySet$byName(dataSet, tags=tags,
chipType=chipType);
dfTxt1 <- writeDataFrame(ds1, columns=c("unitName", "chromosome",
"position", "*"));
tags <- "ACC,ra,-XY,BPN,-XY,AVG,FLN,-XY";
chipType <- "GenomeWideSNP_6";
ds2 <- AromaUnitFracBCnBinarySet$byName(dataSet, tags=tags,
chipType=chipType);
dfTxt2 <- writeDataFrame(ds2, columns=c("unitName", "chromosome",
"position", "*"));
Thank you in advance for your answers,
Nicolas
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