Hi Nicolas,
thanks for reporting this unwanted feature. I've fixed it so that the
default filename is *,total.txt and *,fracB.txt, respectively. Until
the next release is available, you can Install a patch as:
library("aroma.affymetrix");
downloadPackagePatch("aroma.core");
FYI, the writeDataFrame() methods takes argument 'filename' (and
'path') allowing you to name them whatever you wish.
/Henrik
On Tue, Jul 20, 2010 at 11:45 AM, Nicolas Vergne
<nicolas.vergne....@gmail.com> wrote:
> Hi everybody,
>
> Just a little remark.
>
> I can not use writeDataFrame for CN and for BAF in the same script
> because txt file already exists. So I have to create two directories
> (or delete txt directory). Is there another solution?
>
> tags <- "ACC,ra,-XY,BPN,-XY,AVG,A+B,FLN,-XY";
> chipType <- "GenomeWideSNP_6";
> ds1 <- AromaUnitTotalCnBinarySet$byName(dataSet, tags=tags,
> chipType=chipType);
> dfTxt1 <- writeDataFrame(ds1, columns=c("unitName", "chromosome",
> "position", "*"));
>
> tags <- "ACC,ra,-XY,BPN,-XY,AVG,FLN,-XY";
> chipType <- "GenomeWideSNP_6";
> ds2 <- AromaUnitFracBCnBinarySet$byName(dataSet, tags=tags,
> chipType=chipType);
> dfTxt2 <- writeDataFrame(ds2, columns=c("unitName", "chromosome",
> "position", "*"));
>
> Thank you in advance for your answers,
>
> Nicolas
>
> --
> When reporting problems on aroma.affymetrix, make sure 1) to run the latest
> version of the package, 2) to report the output of sessionInfo() and
> traceback(), and 3) to post a complete code example.
>
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--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
You received this message because you are subscribed to the Google Groups
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