[reposting; the forum has hiccups and does not put my replies in the archives or deliver to everyone.]
Hi Nicolas, thanks for reporting this unwanted feature. I've fixed it so that the default filename is *,total.txt and *,fracB.txt, respectively. Until the next release is available, you can Install a patch as: library("aroma.affymetrix"); downloadPackagePatch("aroma.core"); FYI, the writeDataFrame() methods takes argument 'filename' (and 'path') allowing you to name them whatever you wish. /Henrik On Tue, Jul 20, 2010 at 11:45 AM, Nicolas Vergne <nicolas.vergne....@gmail.com> wrote: > Hi everybody, > > Just a little remark. > > I can not use writeDataFrame for CN and for BAF in the same script > because txt file already exists. So I have to create two directories > (or delete txt directory). Is there another solution? > > tags <- "ACC,ra,-XY,BPN,-XY,AVG,A+B,FLN,-XY"; > chipType <- "GenomeWideSNP_6"; > ds1 <- AromaUnitTotalCnBinarySet$byName(dataSet, tags=tags, > chipType=chipType); > dfTxt1 <- writeDataFrame(ds1, columns=c("unitName", "chromosome", > "position", "*")); > > tags <- "ACC,ra,-XY,BPN,-XY,AVG,FLN,-XY"; > chipType <- "GenomeWideSNP_6"; > ds2 <- AromaUnitFracBCnBinarySet$byName(dataSet, tags=tags, > chipType=chipType); > dfTxt2 <- writeDataFrame(ds2, columns=c("unitName", "chromosome", > "position", "*")); > > Thank you in advance for your answers, > > Nicolas > > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ > -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/