I looked at the results, fg,

> names(fg)
[1] "mufScores"         "firmaGeneScores"   "nProbe"
[4] "nullDistributions" "nProbeNull"        "plmObject"
[7] "cls"

           There is no Pvalue (or Qvalue),  but the paper says:

"To alleviate this, we repeatedly sample J probes from
the empirical distribution of all standardized residuals
and calculated the MUF score, giving a null distribution of
MUF scores for J probes. A false discovery rate can be calculated
for the discoveries above a given quantile of the
null distributions."

              How can I get the Qvalue from false discovery rate ?



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