Hi Matt,
You want to *update* the package, not *patch* it: the difference
between updates and patches is explained at
http://aroma-project.org/howtos/updateOrPatch.
So, to update aroma.affymetrix, do:
source("http://aroma-project.org/hbLite.R";);
hbInstall("aroma.affymetrix");
as explained at http://aroma-project.org/install
Hope this helps,
Pierre.
On Wed, Sep 1, 2010 at 10:08 AM, Matt <matt.kowg...@gmail.com> wrote:
> Hi there,
>
> I'd like to update my version of aroma.affymetrix, current version in
> use 0.9.1, so that I can utilize the new CN processing method. I
> followed the instructions on the site but I get the following error
> message
>
> Patching /home/matthew/.Rpatches/aroma.affymetrix/20080508/
> WeightsFile.R
> Failed to source: http://www.braju.com/R//patches/aroma.affymetrix/download.R
> Error in stop(ex$message) :
> Your version (0.9.1) of aroma.affymetrix is out of date. Please
> update.
> In addition: There were 11 warnings (use warnings() to see them)
>> sessionInfo()
> R version 2.7.0 Under development (unstable) (2008-01-21 r44087)
> x86_64-unknown-linux-gnu
>
> locale:
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>
> attached base packages:
> [1] tools stats graphics grDevices datasets utils
> methods
> [8] base
>
> other attached packages:
> [1] Biobase_2.0.1 aroma.affymetrix_0.9.1
> aroma.apd_0.1.7
> [4] R.huge_0.2.0 digest_0.4.2
> aroma.light_1.16.1
> [7] affxparser_1.12.2 R.rsp_0.3.6
> R.cache_0.3.0
> [10] R.utils_1.5.0 R.oo_1.7.3 R.methodsS3_1.2.0
>
>
> How can I fix this?
>
> Thanks for any help.
> Mattt
>
> --
> When reporting problems on aroma.affymetrix, make sure 1) to run the latest
> version of the package, 2) to report the output of sessionInfo() and
> traceback(), and 3) to post a complete code example.
>
>
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>
--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
You received this message because you are subscribed to the Google Groups
"aroma.affymetrix" group with website http://www.aroma-project.org/.
To post to this group, send email to aroma-affymetrix@googlegroups.com
To unsubscribe and other options, go to http://www.aroma-project.org/forum/
