Hi, I have an assembled sequence (Velvet) which I have compared to a reference sequence in ACT. I have run a blastall between the sequences. When I view the comparison in ACT, the scaffolds are ordered in size with the biggest first and only the biggest scaffold is compared to the reference sequence.
What I wonder first is: Why are the scaffolds ordered according to size? How do I make a comparison between all scaffolds (the whole sequence) to the reference strain and not just one scaffold? I am new to this so please describe in detail so I understand. Cheers, Astrid _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
