Hi Cris, > > I am trying to run the RMAExpress plug-in to import Affymetrix data, but > I get the following error: > > net.sf.basedb.core.BaseException: Unable to import root bioassay. > at se.lu.thep.affymetrix.RMAExpress.storeResult (RMAExpress.java:424) > at se.lu.thep.affymetrix.RMAExpress.run(RMAExpress.java:307) > at > net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:88) > at net.sf.basedb.core.InternalJobQueue$JobRunner.run > (InternalJobQueue.java:420) > at java.lang.Thread.run(Thread.java:595) > > I successfully installed and run the RMAExpressConsole, so I have no > clue of where is the problem. > > I'm running BASE in a Linux FC6 with MySQL. > > Thanks a lot for any help.
Have you imported Affymetrix reporters and annotations? BASE2 throws this error if these are not set up prior to running the plugin. If that's the case you you'll need to set up a new configuration in Plugins > Reporter importer. Hope this helps, Steve ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys-and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
