Thank you both, I really forgot to import reporters. Now it works.
--
Cristiane Rocha
Laboratorio de Genetica Molecular
Faculdade de Ciencias Medicas - Unicamp
Brasil - 55 - 19- 3521-8956
2007/3/7, Jari Häkkinen <[EMAIL PROTECTED]>:
Hi,
I think that you forgot to import reporter (probeset) information before
running the plug-in, i.e., there is a probeset in the .cel files that
does not exist in the reporter table.
Jari
Cris wrote:
> Hi all,
>
> I am trying to run the RMAExpress plug-in to import Affymetrix data, but
> I get the following error:
>
> net.sf.basedb.core.BaseException: Unable to import root bioassay.
> at se.lu.thep.affymetrix.RMAExpress.storeResult (RMAExpress.java:424)
> at se.lu.thep.affymetrix.RMAExpress.run(RMAExpress.java:307)
> at
> net.sf.basedb.core.PluginExecutionRequest.invoke(
PluginExecutionRequest.java:88)
> at net.sf.basedb.core.InternalJobQueue$JobRunner.run
> (InternalJobQueue.java:420)
> at java.lang.Thread.run(Thread.java:595)
>
> I successfully installed and run the RMAExpressConsole, so I have no
> clue of where is the problem.
>
> I'm running BASE in a Linux FC6 with MySQL.
>
> Thanks a lot for any help.
>
>
> --
> Cristiane Rocha
> Laboratorio de Genetica Molecular
> Faculdade de Ciencias Medicas - Unicamp
> Brasil - 55 - 19- 3521-8956
>
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