Hi, > >>Thanks I found the link and now I can remove reporters. My problem now >>is that I have 30000 reproters to delete and the system allows me to >>delete a max of 99 each time, the max number reporters displayed per >>page, but my selection is higher. Is there a way to delete all my >>selection in one go? > > > No, unfortunately there isn't. > > >>Another question is how to define a new Raw Data file type. I am >>managing costume macros which I would lie to introduce in BASE but I >>sould define myself the columns that the file containing raw data have. >>I have been looking under Administrative types (software, feature >>extration, etc) but althou I can dfine new types I cannot give any >>characteristics. Is there a way to do this? > > > I'm not really sure that I understand your question but I assume you are > looking for a way to import your data which is in a file format that > doesn't match any of the installed configurations. You should create a > new plugin configuration for the raw data import plugin. > > 1. Go to Adminstrate -> Plugins -> Definitions > 2. Find the "Raw data importer" plugin and click on the name > 3. Click on the "New configuration" button > 4. Give it a name and click on the "Save and configure" button > 5. Then you have to enter some regulare expression, column mappings, > etc. The easiest way to do this is to use the "Test with file" funtion. > > >>One more question is whether there is a way to store in BASE processed >>data, i.e., data that has been processed (eg. normalized and >>differential expression computed) outside BASE. > > > In a sense all data is analysed outside BASE since plugins are not > really part of the core. > > > Is there a way to upload > >>this processed information back to BASE? > > > Not today, but it should not be impossible to create a plugin that can > do that. > > >>Finally I would like to learn about the Analysis possibilities within >>BASE2. Is there any documentation on this? > > > There is a list of plugins shipped with the BASE core at: > http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/coreplugins.html > > There is also a separate website for non-core plugins at: > http://lev.thep.lu.se/trac/baseplugins >
I have a few follow up questions and comments about plugins...I am trying to get MGH plugins from BASE2 working. Unfortunately I am not having much luck (see ticket http://base.thep.lu.se/ticket/511). So my questions are: 1) Which plugins have been successfully tested in Base1PluginExecuter (just so I can rule out it's not me!)? 2) Do you require some help testing Base1PluginExecuter? I am happy to help here to get this working for the common good and also I have a several custom plugins I have written in R and perl (and other plugins used in BASE 1.2) that I would really like to use on the data in BASE. Also I can't really move all my users of BASE 1.2 across to BASE2 until I get these working, since they use these as part of their daily analysis. 3) What are the plans to support non-Java plugins (via development of Base1PluginExecuter or otherwise) given that R and perl are very popular languages in bioinformatics and for arrays most serious analysis is done using R? I know you guys have a lot of work on and are doing fantastic job with BASE2, but being able to easily add analysis routines in *any language* and allow users to run them integrated in the web interface was one of the 'killer' aspects of BASE 1.2... Kind regards and thanks, Steve ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys-and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
