.... > > > > One more question is whether there is a way to store in BASE > processed > > data, i.e., data that has been processed (eg. > normalized and > > differential expression computed) outside BASE. > > > In a sense all data is analysed outside BASE since plugins are > not > really part of the core. > > > Is there a way to upload > > > this processed information back to BASE? > > Not today, but it > should not be impossible to create a plugin that can > do that. > > This is something of interest here too. What would the general > workflow be? Would it be like this? > > 1) upload raw data, samples, experiment info as usual to BASE > 2) perform any reporter or assay merging required to match processed > data's "shape" using existing plugins 3) add processed data using > new plugin (would this create an ExtraValue?) >
What users at my Institution insist as very useful is the functionality of browsing over the results of everyone's gene expression studies, so "what does this gene did in all experiments we have?". When data analysis was performed somewhere else (not within BASE) this would imply to upload processed results possibly as some extra element in the BASE structure (equivalent to Raw Bioassay) which I assume must be quite complicated or simply as annoations to reporters. I can think of how to do the latter option (actually I have done this already "manually") but not preserving the link to the information for the corresponing Experiment (samples, extracts, etc...). Maybe there are some more ideas/experiences out there about this issue? Ana > -- > Bob MacCallum | VectorBase Developer | Kafatos/Christophides Groups | > Division of Cell and Molecular Biology | Imperial College London | > Phone +442075941945 | Email [EMAIL PROTECTED] > > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to > share your opinions on IT & business topics through brief surveys- > and earn cash http://www.techsay.com/default.php? page=join.php&p=sourceforge&CID=DEVDEV > _______________________________________________ > The BASE general discussion mailing list > basedb-users@lists.sourceforge.net > unsubscribe: send a mail with subject "unsubscribe" to > [EMAIL PROTECTED] -- IVIA (http://www.ivia.es) Open WebMail Project (http://openwebmail.org) Debian Project (http://www.debian.org) ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys-and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
