Hi Nicklas, There is no icon showing in the Status column at all -- it's blank. The "Used Values" column says "N/A" for both of the experimental factors I specified.
Not sure what's going on here. Is there anything else I can check to make sure I haven't done this wrong? Cheers Micha ================================== Dr Micha M Bayer Bioinformatics Specialist Genetics Programme The Scottish Crop Research Institute Invergowrie Dundee DD2 5DA Scotland, UK Telephone +44(0)1382 562731 ext. 2309 Fax +44(0)1382 562426 http://www.scri.ac.uk/staff/michabayer ================================== > -----Original Message----- > From: Nicklas Nordborg [mailto:[EMAIL PROTECTED] > Sent: 27 November 2008 18:51 > To: BASE ML > Subject: Re: [base] mass annotation of raw bioassays in BASE 2.8.4 -- > problem with name/ID mapping > > Micha Bayer wrote: > >> -----Original Message----- > >> From: Nicklas Nordborg [mailto:[EMAIL PROTECTED] > >> Sent: 21 November 2008 11:54 > >> To: BASE ML > >> Subject: Re: [base] mass annotation of raw bioassays in BASE 2.8.4 - > - > >> problem with name/ID mapping > >> > > > > [...] > > > >> There is a new function in BASE 2.9 that can make this easier > >> (http://base.thep.lu.se/ticket/1133). First, you need to put the raw > >> bioassays in an experiment and select experimental factors > > (=annotation > >> types) for it. > >> > >> When this has been done, you can access a function on the > experiment's > >> "Properties" page that automatically inherits all annotations for > the > >> experimental factors. After this you may want to check out the > >> "Experiment overview" page to find annotations that have been > > inherited > >> multiple times. This happens if there is more than one parent item > > that > >> has annotation values for the same annotation type. > >> > >> /Nicklas > > > > I have just installed BASE 2.9 and I am trying to get this new > > functionality to work but there does not seem to be any clickable > link > > for this. On the properties page of my experiment it says, next to > the > > yellow warning triangle: "Some raw bioassays are missing this factor > > value; click to automatically try to inherit annotations from > parents" > > but there does not seem to be anything clickable. > > The "Status" column in the list with experimental factors should > display > either a "Ok" icon or the warning icon with information about the > number > of raw bioassays that is missing this annotation. The warning icon and > text should be clickable. If neither of the icons show up and if the > "Used values" column says "Loading..." there might be a problem with > the code that does the check. > > /Nicklas > > ----------------------------------------------------------------------- > -- > This SF.Net email is sponsored by the Moblin Your Move Developer's > challenge > Build the coolest Linux based applications with Moblin SDK & win great > prizes > Grand prize is a trip for two to an Open Source event anywhere in the > world > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > _______________________________________________ > The BASE general discussion mailing list > basedb-users@lists.sourceforge.net > unsubscribe: send a mail with subject "unsubscribe" to > [EMAIL PROTECTED] > > ______________________________________________________________________ > This email has been scanned by the MessageLabs Email Security System. > For more information please visit http://www.messagelabs.com/email > ______________________________________________________________________ ______________________________________________________________________ SCRI, Invergowrie, Dundee, DD2 5DA. 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