Hi Michael, Actually, I tried consolidating the list with stack() but I failed. Perhaps there is no need to change anything but only show how the consolidation is done with stack().
Would you mind showing it for the record? Thank you, Ivan On Wed, Jan 5, 2011 at 4:05 PM, Michael Lawrence <[email protected]> wrote: > > > On Wed, Jan 5, 2011 at 12:45 PM, Ivan Gregoretti <[email protected]> wrote: >> >> It works. Thanks, Martin. >> >> It would be nice to have a pointer to this functionality in the >> documentation. For instance, when I do ?RangedData, I can see a >> RangedData constructor and coercion options. However, ?RangedDataList >> reports its constructor but no coercion. >> > > It's not a coercion in the strict sense. The rbind method is documented for > RangedData. Also, RangedDataList has a stack method for rbind'ing them and > adding a factor column indicating the source of each record. The "unlist" > method on RangedDataList is a bit strange: it does a do.call(c, list) > instead of do.call(rbind, list). I'm thinking about changing that. > > Michael > >> >> Again, thank you. >> >> Ivan >> >> >> >> >> On Wed, Jan 5, 2011 at 3:23 PM, Martin Morgan <[email protected]> wrote: >> > On 01/05/2011 12:12 PM, Ivan Gregoretti wrote: >> >> Hello BioC listers, >> >> >> >> Is there a function that will take a list of RangedData instances and >> >> consolidate them into a large RangedData instance? >> > >> > do.call(rbind, LargeListOfSmallRangedData) >> > >> > ? >> > Martin >> >> >> >> I'm looking for this: >> >> >> >> bigRangedData <- someFunction( LargeListOfSmallRangedData ) >> >> >> >> Thank you, >> >> >> >> Ivan >> >> >> >> _______________________________________________ >> >> Bioc-sig-sequencing mailing list >> >> [email protected] >> >> https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing >> > >> > >> > -- >> > Computational Biology >> > Fred Hutchinson Cancer Research Center >> > 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 >> > >> > Location: M1-B861 >> > Telephone: 206 667-2793 >> > >> >> _______________________________________________ >> Bioc-sig-sequencing mailing list >> [email protected] >> https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > > _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
