That's the correct basic usage, but how about an error message or a little more context?
On Wed, Jan 5, 2011 at 2:08 PM, Ivan Gregoretti <[email protected]> wrote: > I tried to use it to the best of my understanding: > > stack(LargeListOfSmallRangedData, indName='space') > > I think that the failure is due to misuse from my part rather than a bug. > > Ivan > > > > > On Wed, Jan 5, 2011 at 4:51 PM, Michael Lawrence > <[email protected]> wrote: > > Well it would be good to see what you tried. I think there are some > critical > > bug fixes to stack in devel, but not release, so I would try with devel. > > > > Michael > > > > On Wed, Jan 5, 2011 at 1:13 PM, Ivan Gregoretti <[email protected]> > wrote: > >> > >> Hi Michael, > >> > >> Actually, I tried consolidating the list with stack() but I failed. > >> Perhaps there is no need to change anything but only show how the > >> consolidation is done with stack(). > >> > >> Would you mind showing it for the record? > >> > >> Thank you, > >> > >> Ivan > >> > >> > >> > >> > >> On Wed, Jan 5, 2011 at 4:05 PM, Michael Lawrence > >> <[email protected]> wrote: > >> > > >> > > >> > On Wed, Jan 5, 2011 at 12:45 PM, Ivan Gregoretti <[email protected]> > >> > wrote: > >> >> > >> >> It works. Thanks, Martin. > >> >> > >> >> It would be nice to have a pointer to this functionality in the > >> >> documentation. For instance, when I do ?RangedData, I can see a > >> >> RangedData constructor and coercion options. However, ?RangedDataList > >> >> reports its constructor but no coercion. > >> >> > >> > > >> > It's not a coercion in the strict sense. The rbind method is > documented > >> > for > >> > RangedData. Also, RangedDataList has a stack method for rbind'ing them > >> > and > >> > adding a factor column indicating the source of each record. The > >> > "unlist" > >> > method on RangedDataList is a bit strange: it does a do.call(c, list) > >> > instead of do.call(rbind, list). I'm thinking about changing that. > >> > > >> > Michael > >> > > >> >> > >> >> Again, thank you. > >> >> > >> >> Ivan > >> >> > >> >> > >> >> > >> >> > >> >> On Wed, Jan 5, 2011 at 3:23 PM, Martin Morgan <[email protected]> > >> >> wrote: > >> >> > On 01/05/2011 12:12 PM, Ivan Gregoretti wrote: > >> >> >> Hello BioC listers, > >> >> >> > >> >> >> Is there a function that will take a list of RangedData instances > >> >> >> and > >> >> >> consolidate them into a large RangedData instance? > >> >> > > >> >> > do.call(rbind, LargeListOfSmallRangedData) > >> >> > > >> >> > ? > >> >> > Martin > >> >> >> > >> >> >> I'm looking for this: > >> >> >> > >> >> >> bigRangedData <- someFunction( LargeListOfSmallRangedData ) > >> >> >> > >> >> >> Thank you, > >> >> >> > >> >> >> Ivan > >> >> >> > >> >> >> _______________________________________________ > >> >> >> Bioc-sig-sequencing mailing list > >> >> >> [email protected] > >> >> >> https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > >> >> > > >> >> > > >> >> > -- > >> >> > Computational Biology > >> >> > Fred Hutchinson Cancer Research Center > >> >> > 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 > >> >> > > >> >> > Location: M1-B861 > >> >> > Telephone: 206 667-2793 > >> >> > > >> >> > >> >> _______________________________________________ > >> >> Bioc-sig-sequencing mailing list > >> >> [email protected] > >> >> https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > >> > > >> > > > > > > [[alternative HTML version deleted]] _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
