Well it would be good to see what you tried. I think there are some critical bug fixes to stack in devel, but not release, so I would try with devel.
Michael On Wed, Jan 5, 2011 at 1:13 PM, Ivan Gregoretti <[email protected]> wrote: > Hi Michael, > > Actually, I tried consolidating the list with stack() but I failed. > Perhaps there is no need to change anything but only show how the > consolidation is done with stack(). > > Would you mind showing it for the record? > > Thank you, > > Ivan > > > > > On Wed, Jan 5, 2011 at 4:05 PM, Michael Lawrence > <[email protected]> wrote: > > > > > > On Wed, Jan 5, 2011 at 12:45 PM, Ivan Gregoretti <[email protected]> > wrote: > >> > >> It works. Thanks, Martin. > >> > >> It would be nice to have a pointer to this functionality in the > >> documentation. For instance, when I do ?RangedData, I can see a > >> RangedData constructor and coercion options. However, ?RangedDataList > >> reports its constructor but no coercion. > >> > > > > It's not a coercion in the strict sense. The rbind method is documented > for > > RangedData. Also, RangedDataList has a stack method for rbind'ing them > and > > adding a factor column indicating the source of each record. The "unlist" > > method on RangedDataList is a bit strange: it does a do.call(c, list) > > instead of do.call(rbind, list). I'm thinking about changing that. > > > > Michael > > > >> > >> Again, thank you. > >> > >> Ivan > >> > >> > >> > >> > >> On Wed, Jan 5, 2011 at 3:23 PM, Martin Morgan <[email protected]> > wrote: > >> > On 01/05/2011 12:12 PM, Ivan Gregoretti wrote: > >> >> Hello BioC listers, > >> >> > >> >> Is there a function that will take a list of RangedData instances and > >> >> consolidate them into a large RangedData instance? > >> > > >> > do.call(rbind, LargeListOfSmallRangedData) > >> > > >> > ? > >> > Martin > >> >> > >> >> I'm looking for this: > >> >> > >> >> bigRangedData <- someFunction( LargeListOfSmallRangedData ) > >> >> > >> >> Thank you, > >> >> > >> >> Ivan > >> >> > >> >> _______________________________________________ > >> >> Bioc-sig-sequencing mailing list > >> >> [email protected] > >> >> https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > >> > > >> > > >> > -- > >> > Computational Biology > >> > Fred Hutchinson Cancer Research Center > >> > 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 > >> > > >> > Location: M1-B861 > >> > Telephone: 206 667-2793 > >> > > >> > >> _______________________________________________ > >> Bioc-sig-sequencing mailing list > >> [email protected] > >> https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > > > > > [[alternative HTML version deleted]] _______________________________________________ Bioc-sig-sequencing mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
