include the full path of the biojava archive in the definition of your classpath:
#java -cp /uufs/inscc.utah.edu/common/home/ahammer/ext/xerces.jar:/uufs/inscc.utah.edu/common/home/ahammer/ext/biojava.jar -jar MotifSearch.jar Alex. On Fri, 2005-02-11 at 14:02, Andy Hammer wrote: > I think I am on the same page as everyone here. > But I still get: > >java -cp xerces.jar:biojava.jar -jar MotifSearch.jar > Exception in thread "main" > java.lang.NoClassDefFoundError: > org/biojava/bio/BioException > > More info: > [EMAIL PROTECTED]:~/ext> pwd > /uufs/inscc.utah.edu/common/home/ahammer/ext > [EMAIL PROTECTED]:~/ext> > [EMAIL PROTECTED]:~/ext> echo $CLASSPATH > .:/uufs/inscc.utah.edu/common/home/ahammer/ext/ > [EMAIL PROTECTED]:~/ext> > [EMAIL PROTECTED]:~/ext> ls -l > total 4772 > -rw-r--r-- 1 ahammer gestelan 2674782 2003-10-15 > 10:37 biojava.jar > -rw-r--r-- 1 ahammer gestelan 93463 2003-10-07 > 17:59 bytecode.jar > -rw-r--r-- 1 ahammer gestelan 30117 2003-10-07 > 17:59 commons-cli.jar > -rw-r--r-- 1 ahammer gestelan 145563 2003-10-15 > 10:04 grammars.jar > -rw-r--r-- 1 ahammer gestelan 46056 2003-10-07 > 17:59 htmlparser.jar > -rw-r--r-- 1 ahammer gestelan 50962 2005-02-10 > 11:38 MotifSearch.jar > -rw-r--r-- 1 ahammer gestelan 1808885 2005-02-11 > 11:55 xerces.jar > [EMAIL PROTECTED]:~/ext> > > I don't understard why this doesn't work. It works > fine on a windows box. It makes me think it wouldn't > work even if I had access to the jre/ext directory. > > Andy > > > > __________________________________ > Do you Yahoo!? > Yahoo! Mail - Easier than ever with enhanced search. Learn more. > http://info.mail.yahoo.com/mail_250 > _______________________________________________ > Biojava-l mailing list - Biojava-l@biojava.org > http://biojava.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - Biojava-l@biojava.org http://biojava.org/mailman/listinfo/biojava-l
