Hello Alex, Combining the java command line arguments -cp and -jar will not work as you expect -- the -jar argument overrides the CLASSPATH.
"When you use this option, the JAR file is the source of all user classes, and other user class path settings are ignored." > http://java.sun.com/j2se/1.5.0/docs/tooldocs/solaris/java.html#options michael On Fri, 11 Feb 2005, Alexandre Dionne-Laporte wrote: > include the full path of the biojava archive in the definition of your > classpath: > > #java -cp > /uufs/inscc.utah.edu/common/home/ahammer/ext/xerces.jar:/uufs/inscc.utah.edu/common/home/ahammer/ext/biojava.jar > -jar MotifSearch.jar > > Alex. > > On Fri, 2005-02-11 at 14:02, Andy Hammer wrote: > > I think I am on the same page as everyone here. > > But I still get: > > >java -cp xerces.jar:biojava.jar -jar MotifSearch.jar > > Exception in thread "main" > > java.lang.NoClassDefFoundError: > > org/biojava/bio/BioException > > > > More info: > > [EMAIL PROTECTED]:~/ext> pwd > > /uufs/inscc.utah.edu/common/home/ahammer/ext > > [EMAIL PROTECTED]:~/ext> > > [EMAIL PROTECTED]:~/ext> echo $CLASSPATH > > .:/uufs/inscc.utah.edu/common/home/ahammer/ext/ > > [EMAIL PROTECTED]:~/ext> > > [EMAIL PROTECTED]:~/ext> ls -l > > total 4772 > > -rw-r--r-- 1 ahammer gestelan 2674782 2003-10-15 > > 10:37 biojava.jar > > -rw-r--r-- 1 ahammer gestelan 93463 2003-10-07 > > 17:59 bytecode.jar > > -rw-r--r-- 1 ahammer gestelan 30117 2003-10-07 > > 17:59 commons-cli.jar > > -rw-r--r-- 1 ahammer gestelan 145563 2003-10-15 > > 10:04 grammars.jar > > -rw-r--r-- 1 ahammer gestelan 46056 2003-10-07 > > 17:59 htmlparser.jar > > -rw-r--r-- 1 ahammer gestelan 50962 2005-02-10 > > 11:38 MotifSearch.jar > > -rw-r--r-- 1 ahammer gestelan 1808885 2005-02-11 > > 11:55 xerces.jar > > [EMAIL PROTECTED]:~/ext> > > > > I don't understard why this doesn't work. It works > > fine on a windows box. It makes me think it wouldn't > > work even if I had access to the jre/ext directory. > > > > Andy > > > > > > > > __________________________________ > > Do you Yahoo!? > > Yahoo! Mail - Easier than ever with enhanced search. Learn more. > > http://info.mail.yahoo.com/mail_250 > > _______________________________________________ > > Biojava-l mailing list - Biojava-l@biojava.org > > http://biojava.org/mailman/listinfo/biojava-l > _______________________________________________ > Biojava-l mailing list - Biojava-l@biojava.org > http://biojava.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - Biojava-l@biojava.org http://biojava.org/mailman/listinfo/biojava-l
