Thank you for your help. Another problem is how to use the Caret software to
generate regularly spaced Cartesian grids on the flattened PALS-B12 average
surface of the left and right hemispheres. Can I use this 3-dimensional (3D)
stereotactic coordinates from the PALS-B12 average fiducial (midthickness)
surface for each grid location to obtain the voxel coordinates (3 × 3 × 3 mm
resolution) containing that point in fMRI?
________________________________________
From: [email protected]
[[email protected]] on behalf of Donna Dierker
[[email protected]]
Sent: Friday, August 01, 2014 5:34 PM
To: Caret, SureFit, and SuMS software users
Cc: Tang, Yiyuan
Subject: Re: [caret-users] projecting functional MRI to gii surfaces
Push Toolbar: D/C and make sure the primary overlay is Metric.
Make sure the right column is selected.
If that check out okay, then I would do:
File: Open Data File: Volume Functional File
Load the volume you just mapped
Switch to volume view and select view All (as opposed to H (horizontal or
axial).
Select D/C and on the page selection drop-down menu, scroll all the way to the
bottom
something like volume surface outline
Toggle on the fiducial surface used for the mapping, so that you can see how
the surface aligns with the volume.
Sometimes there are header issues, and the origin is not set correctly,
resulting in faulty volume-surface alignment.
On Aug 1, 2014, at 4:29 PM, "Tang, Yan" <[email protected]> wrote:
> When I open the spec file and mapped the Metric, only the surface was
> displayed. The result is in the attachment. How should I do?
> ________________________________________
> From: [email protected]
> [[email protected]] on behalf of Donna Dierker
> [[email protected]]
> Sent: Friday, August 01, 2014 4:02 PM
> To: Caret, SureFit, and SuMS software users
> Cc: Tang, Yiyuan
> Subject: Re: [caret-users] projecting functional MRI to gii surfaces
>
> Hmmm. Sounds like more than a header to me.
>
> When you open the spec file you selected when you mapped the data, and select
> the output file that is 446kb, what happens?
>
> You must make sure you select Metric on the D/C: Overlay/Underlay Surface
> menu (primary or secondary, typically). Else it won't display.
>
>
> On Aug 1, 2014, at 2:47 PM, "Tang, Yan" <[email protected]> wrote:
>
>> I am sure that the file exist and the size of file is 446KB. Is It correct?
>> ________________________________________
>> From: [email protected]
>> [[email protected]] on behalf of Donna Dierker
>> [[email protected]]
>> Sent: Friday, August 01, 2014 10:10 AM
>> To: Caret, SureFit, and SuMS software users
>> Cc: Tang, Yiyuan
>> Subject: Re: [caret-users] projecting functional MRI to gii surfaces
>>
>> Hi Yan,
>>
>> Could you use a terminal window or file manager to check whether the file
>> exists, and if so, what its size is.
>>
>> We have seen cases before where the file was just a header -- no data.
>> Inexplicably, the presence of a non-english character set on the system used
>> has caused this sort of trouble. If there is a system nearby that does not
>> have a non-english character set installed, you might see if Caret works
>> there. Or remove any non-english character sets on your system and see if
>> it helps.
>>
>> Donna
>>
>>
>> On Jul 31, 2014, at 3:52 PM, "Tang, Yan" <[email protected]> wrote:
>>
>>> Dear all,
>>>
>>> I used the Freesurfer_to_fs_LR Pipeline to get 164k fs_LR surface. Now I
>>> want to map functional volumes to surfaces.
>>> In volume selection page, I choose my file 'ff001_010.nii'; In spec file
>>> and surface selection page, I choose the file 'study1.L.orig.164k_fs_LR'. I
>>> get a file 'map_data_0_31_Jul_2014_15_10_13.metric'. But I find I couldn't
>>> open this file. Which step is wrong? How can you do it?
>>> _______________________________________________
>>> caret-users mailing list
>>> [email protected]
>>> http://brainvis.wustl.edu/mailman/listinfo/caret-users
>>
>>
>> _______________________________________________
>> caret-users mailing list
>> [email protected]
>> http://brainvis.wustl.edu/mailman/listinfo/caret-users
>>
>> _______________________________________________
>> caret-users mailing list
>> [email protected]
>> http://brainvis.wustl.edu/mailman/listinfo/caret-users
>
>
> _______________________________________________
> caret-users mailing list
> [email protected]
> http://brainvis.wustl.edu/mailman/listinfo/caret-users
> <QQ截图20140801162715.png>_______________________________________________
> caret-users mailing list
> [email protected]
> http://brainvis.wustl.edu/mailman/listinfo/caret-users
_______________________________________________
caret-users mailing list
[email protected]
http://brainvis.wustl.edu/mailman/listinfo/caret-users
_______________________________________________
caret-users mailing list
[email protected]
http://brainvis.wustl.edu/mailman/listinfo/caret-users
