Hi Rex, (not claiming it is the best) may be you can use structure comparison tool that allows you to load a bunch of similar structures, superpose them and corresponding maps, and it will highlight various differences (Ramachandran, rotamers, secondary structure, etc..).
Have a look at page #17 here: http://cci.lbl.gov/~afonine/pavel_phenix_general.pdf Pavel. On Wed, Apr 13, 2011 at 1:18 PM, REX PALMER <[email protected]>wrote: > Dear All > What is the best program to use for comparing two protein structures which > are very similar both structurally and wrt aa sequence? ie to get the rms > deviations both generally and in selected regions. > > Rex Palmer > Birkbeck College >
