Hello Rex, most programs probably use similar algorithms for superpositions, so you can pick your choice: - O - lsqman - lsqkab - coot - ... are all similarily comfortable to use in my opinion.
Tim On Wed, Apr 13, 2011 at 09:18:27PM +0100, REX PALMER wrote: > Dear All > What is the best program to use for comparing two protein structures which > are very similar both structurally and wrt aa sequence? ie to get the rms > deviations both generally and in selected regions. > > Rex Palmer > Birkbeck College -- -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen phone: +49 (0)551 39 22149 GPG Key ID = A46BEE1A
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