I have not seen MUSTANG in the list yet. http://pxgrid.med.monash.edu.au:8080/mustangserver/ Jürgen
On Apr 14, 2011, at 9:06 AM, Katie Carr wrote: I would like to compare several very similar structures (more than 10) to get the rms deviation over all. Is this possible with any program? Thanks Katie Carr University of Nottingham -----Original Message----- From: CCP4 bulletin board [mailto:[email protected]] On Behalf Of Eleanor Dodson Sent: 14 April 2011 11:51 To: [email protected]<mailto:[email protected]> Subject: Re: [ccp4bb] Comparing two proteins On 04/13/2011 09:18 PM, REX PALMER wrote: Dear All What is the best program to use for comparing two protein structures which are very similar both structurally and wrt aa sequence? ie to get the rms deviations both generally and in selected regions. Rex Palmer Birkbeck College Using CCP4 go to the coordinate utility Superpose molecules You can either compare things using secondary structure or by specifying residue spans Underlying programs are PISA (also available at the BI msd server) and LSQKAB Eleanor This message and any attachment are intended solely for the addressee and may contain confidential information. If you have received this message in error, please send it back to me, and immediately delete it. Please do not use, copy or disclose the information contained in this message or in any attachment. Any views or opinions expressed by the author of this email do not necessarily reflect the views of the University of Nottingham. This message has been checked for viruses but the contents of an attachment may still contain software viruses which could damage your computer system: you are advised to perform your own checks. Email communications with the University of Nottingham may be monitored as permitted by UK legislation. ...................... Jürgen Bosch Johns Hopkins Bloomberg School of Public Health Department of Biochemistry & Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Phone: +1-410-614-4742 Lab: +1-410-614-4894 Fax: +1-410-955-3655 http://web.mac.com/bosch_lab/
