Yes, I forgot about escet. The more up to date wab address is http://webapps.embl-hamburg.de/escet/ even though that page still lists Thomas' address in Italy
Tim On Thu, Apr 14, 2011 at 10:05:47AM +0200, Gergely Katona wrote: > ESCET is also very useful to reveal small, but significant > differences. It also identifies conformationally invariant regions for > superposition. > > http://schneider.group.ifom-ieo-campus.it/escet/index.html > > Gergely > > On Thu, Apr 14, 2011 at 9:34 AM, Tim Gruene <[email protected]> wrote: > > Hello Rex, > > > > most programs probably use similar algorithms for superpositions, so you can > > pick your choice: > > - O > > - lsqman > > - lsqkab > > - coot > > - ... > > are all similarily comfortable to use in my opinion. > > > > Tim > > > > On Wed, Apr 13, 2011 at 09:18:27PM +0100, REX PALMER wrote: > >> Dear All > >> What is the best program to use for comparing two protein structures which > >> are very similar both structurally and wrt aa sequence? ie to get the rms > >> deviations both generally and in selected regions. > >> > >> Rex Palmer > >> Birkbeck College > > > > -- > > -- > > Tim Gruene > > Institut fuer anorganische Chemie > > Tammannstr. 4 > > D-37077 Goettingen > > > > phone: +49 (0)551 39 22149 > > > > GPG Key ID = A46BEE1A > > > > > > -----BEGIN PGP SIGNATURE----- > > Version: GnuPG v1.4.10 (GNU/Linux) > > > > iD8DBQFNpqOSUxlJ7aRr7hoRAuLIAJ0Tf�㤛聬틢谋擄ਏ� > > x3TuOjPcJqLZgL1vnANuUV0= > > =vQE1 > > -----END PGP SIGNATURE----- > > > > > > > > -- > Gergely Katona, PhD > associate professor, docent > Department of Chemistry, University of Gothenburg > Box 462, 40530 Göteborg, Sweden > Tel: +46-31-786-3959 / M: +46-70-716-7586 / Fax: +46-31-786-3910 > Web: http://www.csb.gu.se/katona, Email: [email protected] -- -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen phone: +49 (0)551 39 22149 GPG Key ID = A46BEE1A
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