Hello If you are dealing with oligomers conserved in evolution, InterEvDock can be a good choice since it implements a coevolution-based score (http://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py#forms::InterEvDock2). Their new version handle oligomers with sequence alignments automatically generated for every subunit. It performed very well in CAPRI. Kind regards JB
Laboratory of Structural Biology and Radiobiology I2BC (Institute of Integrated Biology of the Cell) CEA, Saclay, Bât 144, room 140D, 91191 Gif-s-Yvette, FRANCE phone: +33 (0)1 69 08 76 77 jb.charbonn...@cea.fr<mailto:jb.charbonn...@cea.fr>
