Dear all, Thanks a lot to all of you who made helpful suggestions – I’ll look into them one by one.
Best wishes Thomas From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of CHARBONNIER Jean-Baptiste <jb.charbonn...@cea.fr> Reply-To: CHARBONNIER Jean-Baptiste <jb.charbonn...@cea.fr> Date: Friday, February 2, 2018 at 4:18 PM To: "CCP4BB@JISCMAIL.AC.UK" <CCP4BB@JISCMAIL.AC.UK> Subject: [ccp4bb] Modelling protein/protein interfaces Hello If you are dealing with oligomers conserved in evolution, InterEvDock can be a good choice since it implements a coevolution-based score (http://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py#forms::InterEvDock2). Their new version handle oligomers with sequence alignments automatically generated for every subunit. It performed very well in CAPRI. Kind regards JB Laboratory of Structural Biology and Radiobiology I2BC (Institute of Integrated Biology of the Cell) CEA, Saclay, Bât 144, room 140D, 91191 Gif-s-Yvette, FRANCE phone: +33 (0)1 69 08 76 77 jb.charbonn...@cea.fr<mailto:jb.charbonn...@cea.fr>
