Yes, zero occupancy would reflect that. But not the coordinates in any proper way. Then what would be the point of associating occupancy and B-factors with totally incorrect coordinates? Debanu
On Fri, Mar 10, 2023 at 8:58 AM Jurgen Bosch <jxb...@case.edu> wrote: > Going back to RIP phasing methods :-) > So Harry in your particular case occupancy of zero would actually reflect > reality for those “combusted” atoms. > > Jürgen > > > On Mar 10, 2023, at 11:56 AM, Harry Powell < > 0000193323b1e616-dmarc-requ...@jiscmail.ac.uk> wrote: > > > > Hi folks > > > > One other thing that I haven’t noticed anyone mentioning yet (sorry to > those who have mentioned it!!) is that you may not see your sidechain atoms > in density because they are not there at all, in spite of what you may have > had in the original protein, or even if the atoms were really there in the > crystal _before_ exposure to the beam. > > > > The coordinates are supposed to be what you actually find, not what you > hope is there. > > > > Just my two ha’porth > > > > Harry > > > > ######################################################################## > > > > To unsubscribe from the CCP4BB list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ > -- --- LinkedIn: www.linkedin.com/in/debanudas Cal Alumni: cal.berkeley.edu/debanudas ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
