Thanks to kevin and paul. Actually changing the colour by molecule works only if it is displayed in bonds represenation. the moment i go to the backbone trace reperesentation then the colour changes... am i doing anything wrong...
i got the amount of rotation... but can you please let me know little clearly.. how to get the lmn and a point on the rotation axis. regards John On Tue, Jul 29, 2008 at 4:36 PM, Paul Emsley <[EMAIL PROTECTED]>wrote: > Kevin Cowtan wrote: > >> john kryst wrote: >> >>> Hi all !! >>> >> >> Hi! >> >> 1. When we do the superposition in coot, does it give the angle of >>> rotation? like it needs 30 deg to rotate and x A translation along the >>> axis. I tried looking in the terminal but i couldn't get it.. it would be >>> extreemly usefull, if coot prints the lmn of the rotation axis and a point >>> on the rotation axis. >>> >> >> If you are using a pre-release build after revision 963 (April 17 2008), >> then SSM superpose should also display Euler and Polar angles in the >> terminal. The polar angles contain the info you want - kappa (3rd number) is >> the angle of rotation. Omega and phi (1st and second numbers) give the >> direction of the rotation axis. >> > > > Yes, coot prints it. You have to scroll up beyond the table of differences > if you mean SSM superpose. For LSQ position, the fractional matrix is also > printed. > > > 2. How to colour each molecule separately... >>> >> >> Edit/bond colours >> > > In conjunction with Display Manager -> Bonds (Colour by Molecule). >
