Dear all, today I finally tried WSL2 on Windows10, with the intent of being able to use CCP4 including coot, and XDS / XDSGUI e.g. in workshops when many students have Windows machines.
I was successful when using Xming (but not VcXsrv) as X-server. My writeup is at https://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/Installation#WSL2 . I'd appreciate it if people would check this out, and improve the documentation. I'd also love hearing about the performance of coot, compared with Linux and wincoot on Windows, from you. HTH, Kay On Mon, 23 Nov 2020 15:01:58 +0100, Johannes Cramer <[email protected]> wrote: >Dear all, > >I recently tried to get my work environment running on Ubuntu20.04 run >through Windows10 with WSL2. So far it was a great experience, but I cannot >get coot to work properly. >I installed ccp4 and coot with it. >When I start coot, the gui starts, there are some warnings (see below) and >I can see all the elements however the coordinate space is not completely >on the screen (s. screenshots). >Can anyone help? >When I type ldd /opt/xtal/ccp4-7.1/libexec/coot-bin I get no missing >libraries. > >Cheers, >Johannes > > >terminal output > >> (coot-bin:18683): GLib-GObject-WARNING **: g_object_set_valist: object >> class 'GtkSettings' has no property named >> 'gtk-application-prefer-dark-theme' >> INFO:: Using Standard CCP4 Refmac dictionary from CLIBD_MON: >> /mnt/d/monomers >> There are 166 data in /mnt/d/monomers/list/mon_lib_list.cif >> There are 2 data in /mnt/d/monomers/a/ALA.cif >> There are 2 data in /mnt/d/monomers/a/ASP.cif >> There are 2 data in /mnt/d/monomers/a/ASN.cif >> There are 2 data in /mnt/d/monomers/c/CYS.cif >> There are 2 data in /mnt/d/monomers/g/GLN.cif >> There are 2 data in /mnt/d/monomers/g/GLY.cif >> There are 2 data in /mnt/d/monomers/g/GLU.cif >> There are 2 data in /mnt/d/monomers/p/PHE.cif >> There are 2 data in /mnt/d/monomers/h/HIS.cif >> There are 2 data in /mnt/d/monomers/i/ILE.cif >> There are 2 data in /mnt/d/monomers/l/LYS.cif >> There are 2 data in /mnt/d/monomers/l/LEU.cif >> There are 2 data in /mnt/d/monomers/m/MET.cif >> There are 2 data in /mnt/d/monomers/m/MSE.cif >> There are 2 data in /mnt/d/monomers/p/PRO.cif >> There are 2 data in /mnt/d/monomers/a/ARG.cif >> There are 2 data in /mnt/d/monomers/s/SER.cif >> There are 2 data in /mnt/d/monomers/t/THR.cif >> There are 2 data in /mnt/d/monomers/v/VAL.cif >> There are 2 data in /mnt/d/monomers/t/TRP.cif >> There are 2 data in /mnt/d/monomers/t/TYR.cif >> There are 2 data in /mnt/d/monomers/p/PO4.cif >> There are 2 data in /mnt/d/monomers/s/SO4.cif >> There are 2 data in /mnt/d/monomers/g/GOL.cif >> There are 2 data in /mnt/d/monomers/c/CIT.cif >> There are 2 data in /mnt/d/monomers/e/EDO.cif >> There are 2 data in /mnt/d/monomers/a/A.cif >> There are 2 data in /mnt/d/monomers/c/C.cif >> There are 2 data in /mnt/d/monomers/g/G.cif >> There are 2 data in /mnt/d/monomers/u/U.cif >> There are 2 data in /mnt/d/monomers/d/DA.cif >> There are 2 data in /mnt/d/monomers/d/DC.cif >> There are 2 data in /mnt/d/monomers/d/DG.cif >> There are 2 data in /mnt/d/monomers/d/DT.cif >> There are 2 data in /mnt/d/monomers/h/HOH.cif >> There are 2 data in /mnt/d/monomers/n/NA.cif >> INFO:: Reading coordinate file: >> /opt/xtal/ccp4-7.1/share/coot/standard-residues.pdb >> INFO:: file /opt/xtal/ccp4-7.1/share/coot/standard-residues.pdb has been >> read. >> Spacegroup: P 1 >> (filter-fileselection-filenames-state) >> (get-active-map-drag-flag) >> (use-graphics-interface-state) >> INFO:: coot.py imported >> ** (coot-bin:18683): WARNING **: Trying to register gtype >> 'GMountMountFlags' as enum when in fact it is of type 'GFlags' >> ** (coot-bin:18683): WARNING **: Trying to register gtype >> 'GDriveStartFlags' as enum when in fact it is of type 'GFlags' >> ** (coot-bin:18683): WARNING **: Trying to register gtype >> 'GSocketMsgFlags' as enum when in fact it is of type 'GFlags' >> INFO:: coot_python initialized >> Running python script >> /opt/xtal/ccp4-7.1/lib/python2.7/site-packages/coot/coot_load_modules.py >> Good Afternoon ,,,, Welcome to Coot version 0.9.2 >> (set-display-intro-string "Good Afternoon ,,,, Welcome to Coot version >> 0.9.2") >> Coot Python Scripting GUI code found and loaded. >> Coot Python Scripting GUI code found and loaded. >> (use-graphics-interface-state) >> (filter-fileselection-filenames-state) >> (get-active-map-drag-flag) >> (use-graphics-interface-state) >> Coot Scheme Scripting GUI code found and loaded. >> Good afternoon ,,,. Welcome to Coot 0.9.2. >> (set-display-intro-string "Good afternoon ,,,. Welcome to Coot 0.9.2") >> (set-display-lists-for-maps 1) >> ----------------------------- with enhanced-ligand! ------------------- >> load /home/cramejo/.coot-preferences/coot-preferences.scm >> (set-filter-fileselection-filenames 0) >> (unset-sticky-sort-by-date) >> (set-colour-map-rotation-on-read-pdb 21.00) >> (set-colour-map-rotation-on-read-pdb-c-only-flag 1) >> (set-density-size 16.00) >> (set-swap-difference-map-colours 0) >> (set-colour-map-rotation-for-map 14.00) >> (set-active-map-drag-flag 1) >> (set-idle-function-rotate-angle 1.00) >> (filter-fileselection-filenames-state) >> (get-active-map-drag-flag) >> (use-graphics-interface-state) >> WARNING: couldn't write to state file 0-coot-history.py >> WARNING: couldn't write to state file 0-coot-history.scm > > >[image: image.png] > >######################################################################## > >To unsubscribe from the COOT list, click the following link: >https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 > >This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list >hosted by www.jiscmail.ac.uk, terms & conditions are available at >https://www.jiscmail.ac.uk/policyandsecurity/ > ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
