Not really answering your question but if you are on windows maybe you
want to try native WinCoot instead? There is an installer for 0.9.2 now:
https://github.com/bernhardcl/coot/releases/tag/Release-0.9.2
https://bernhardcl.github.io/coot/wincoot-releases.html
So far I only tried on WSL and it worked (using VcXsrv using native
opengl) but it was slow...
B
On 23/11/2020 15:01, Johannes Cramer wrote:
Dear all,
I recently tried to get my work environment running on Ubuntu20.04 run
through Windows10 with WSL2. So far it was a great experience, but I
cannot get coot to work properly.
I installed ccp4 and coot with it.
When I start coot, the gui starts, there are some warnings (see below)
and I can see all the elements however the coordinate space is not
completely on the screen (s. screenshots).
Can anyone help?
When I type ldd /opt/xtal/ccp4-7.1/libexec/coot-bin I get no missing
libraries.
Cheers,
Johannes
terminal output
(coot-bin:18683): GLib-GObject-WARNING **: g_object_set_valist:
object class 'GtkSettings' has no property named
'gtk-application-prefer-dark-theme'
INFO:: Using Standard CCP4 Refmac dictionary from CLIBD_MON:
/mnt/d/monomers
There are 166 data in /mnt/d/monomers/list/mon_lib_list.cif
There are 2 data in /mnt/d/monomers/a/ALA.cif
There are 2 data in /mnt/d/monomers/a/ASP.cif
There are 2 data in /mnt/d/monomers/a/ASN.cif
There are 2 data in /mnt/d/monomers/c/CYS.cif
There are 2 data in /mnt/d/monomers/g/GLN.cif
There are 2 data in /mnt/d/monomers/g/GLY.cif
There are 2 data in /mnt/d/monomers/g/GLU.cif
There are 2 data in /mnt/d/monomers/p/PHE.cif
There are 2 data in /mnt/d/monomers/h/HIS.cif
There are 2 data in /mnt/d/monomers/i/ILE.cif
There are 2 data in /mnt/d/monomers/l/LYS.cif
There are 2 data in /mnt/d/monomers/l/LEU.cif
There are 2 data in /mnt/d/monomers/m/MET.cif
There are 2 data in /mnt/d/monomers/m/MSE.cif
There are 2 data in /mnt/d/monomers/p/PRO.cif
There are 2 data in /mnt/d/monomers/a/ARG.cif
There are 2 data in /mnt/d/monomers/s/SER.cif
There are 2 data in /mnt/d/monomers/t/THR.cif
There are 2 data in /mnt/d/monomers/v/VAL.cif
There are 2 data in /mnt/d/monomers/t/TRP.cif
There are 2 data in /mnt/d/monomers/t/TYR.cif
There are 2 data in /mnt/d/monomers/p/PO4.cif
There are 2 data in /mnt/d/monomers/s/SO4.cif
There are 2 data in /mnt/d/monomers/g/GOL.cif
There are 2 data in /mnt/d/monomers/c/CIT.cif
There are 2 data in /mnt/d/monomers/e/EDO.cif
There are 2 data in /mnt/d/monomers/a/A.cif
There are 2 data in /mnt/d/monomers/c/C.cif
There are 2 data in /mnt/d/monomers/g/G.cif
There are 2 data in /mnt/d/monomers/u/U.cif
There are 2 data in /mnt/d/monomers/d/DA.cif
There are 2 data in /mnt/d/monomers/d/DC.cif
There are 2 data in /mnt/d/monomers/d/DG.cif
There are 2 data in /mnt/d/monomers/d/DT.cif
There are 2 data in /mnt/d/monomers/h/HOH.cif
There are 2 data in /mnt/d/monomers/n/NA.cif
INFO:: Reading coordinate file:
/opt/xtal/ccp4-7.1/share/coot/standard-residues.pdb
INFO:: file /opt/xtal/ccp4-7.1/share/coot/standard-residues.pdb has
been read.
Spacegroup: P 1
(filter-fileselection-filenames-state)
(get-active-map-drag-flag)
(use-graphics-interface-state)
INFO:: coot.py imported
** (coot-bin:18683): WARNING **: Trying to register gtype
'GMountMountFlags' as enum when in fact it is of type 'GFlags'
** (coot-bin:18683): WARNING **: Trying to register gtype
'GDriveStartFlags' as enum when in fact it is of type 'GFlags'
** (coot-bin:18683): WARNING **: Trying to register gtype
'GSocketMsgFlags' as enum when in fact it is of type 'GFlags'
INFO:: coot_python initialized
Running python script
/opt/xtal/ccp4-7.1/lib/python2.7/site-packages/coot/coot_load_modules.py
Good Afternoon ,,,, Welcome to Coot version 0.9.2
(set-display-intro-string "Good Afternoon ,,,, Welcome to Coot
version 0.9.2")
Coot Python Scripting GUI code found and loaded.
Coot Python Scripting GUI code found and loaded.
(use-graphics-interface-state)
(filter-fileselection-filenames-state)
(get-active-map-drag-flag)
(use-graphics-interface-state)
Coot Scheme Scripting GUI code found and loaded.
Good afternoon ,,,. Welcome to Coot 0.9.2.
(set-display-intro-string "Good afternoon ,,,. Welcome to Coot 0.9.2")
(set-display-lists-for-maps 1)
----------------------------- with enhanced-ligand! -------------------
load /home/cramejo/.coot-preferences/coot-preferences.scm
(set-filter-fileselection-filenames 0)
(unset-sticky-sort-by-date)
(set-colour-map-rotation-on-read-pdb 21.00)
(set-colour-map-rotation-on-read-pdb-c-only-flag 1)
(set-density-size 16.00)
(set-swap-difference-map-colours 0)
(set-colour-map-rotation-for-map 14.00)
(set-active-map-drag-flag 1)
(set-idle-function-rotate-angle 1.00)
(filter-fileselection-filenames-state)
(get-active-map-drag-flag)
(use-graphics-interface-state)
WARNING: couldn't write to state file 0-coot-history.py
WARNING: couldn't write to state file 0-coot-history.scm
image.png
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