Hi Paul, It works now. Thank you so much!
Best, Chen From: Mailing list for users of COOT Crystallographic Software <COOT@JISCMAIL.AC.UK> on behalf of Paul Emsley <pems...@mrc-lmb.cam.ac.uk> Date: Saturday, June 25, 2022 at 2:08 AM To: COOT@JISCMAIL.AC.UK <COOT@JISCMAIL.AC.UK> Subject: Re: Mac Coot 1.0.06-pre mutate sequence not working * External Email - Caution * On 25/06/2022 06:20, Paul Emsley wrote: On 25/06/2022 04:12, Sun, Chen wrote: I am able to run coot successfully from terminal. However, when I was trying to mutate sequences, it reported the following error message: debug:: safe_python_command() PyRun_SimpleString() coot.mutate_residue_range(0, "C", 1, 2, "FF") Traceback (most recent call last): File "<string>", line 1, in <module> NameError: name 'coot' is not defined Is this my environment issue or something else? Any help would be appreciated. I can reproduce this - I'll track it down. OK done. Uninstall your coot and reinstall it as you did last time (using --verbose --HEAD) Paul. ________________________________ To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1<https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jiscmail.ac.uk%2Fcgi-bin%2FWA-JISC.exe%3FSUBED1%3DCOOT%26A%3D1&data=05%7C01%7Csun.c%40wustl.edu%7C2ae7148a08a248e42da108da5679762b%7C4ccca3b571cd4e6d974b4d9beb96c6d6%7C0%7C0%7C637917377074407371%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=BFytEspaRAFcpngpH4%2Bs69sqQWjUlmOEujab0eqqmQ4%3D&reserved=0> ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
