Hi Paul,
Now the copy molecule is not working. The save coordinate also failed to launch
after I have mutated a long sequence. It doesn’t allow me to save the session.
Please see the error message below.
on_glarea_key_press_notify() key not found in map: 65505
debug:: safe_python_command() PyRun_SimpleString() import coot_gui;
coot_gui.molecule_chooser_gui("Molecule to Copy...", lambda imol:
coot.copy_molecule(imol))
Selected: imol=<gi.overrides.Gtk.TreeModelRow object at 0x145337f70>
Traceback (most recent call last):
File
"/opt/homebrew/Cellar/python@3.9/3.9.13_1/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/coot/coot_gui.py",
line 931, in on_ok_button_clicked
callback_function(imol_model)
File "<string>", line 1, in <lambda>
NameError: name 'coot' is not defined
Traceback (most recent call last):
File
"/opt/homebrew/Cellar/python@3.9/3.9.13_1/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/coot/coot_gui.py",
line 931, in on_ok_button_clicked
callback_function(imol_model)
File "<string>", line 1, in <lambda>
NameError: name 'coot' is not defined
(coot-bin:99643): Gtk-CRITICAL **: 11:52:47.895:
gtk_file_chooser_set_do_overwrite_confirmation: assertion 'GTK_IS_FILE_CHOOSER
(chooser)' failed
(coot-bin:99643): Gtk-CRITICAL **: 11:52:47.895:
gtk_file_chooser_set_current_name: assertion 'GTK_IS_FILE_CHOOSER (chooser)'
failed
sys:1: Warning: g_object_set_data: assertion 'G_IS_OBJECT (object)' failed
(coot-bin:99643): Gtk-CRITICAL **: 11:52:47.895: gtk_file_chooser_add_filter:
assertion 'GTK_IS_FILE_CHOOSER (chooser)' failed
(coot-bin:99643): Gtk-CRITICAL **: 11:52:47.895: gtk_file_chooser_add_filter:
assertion 'GTK_IS_FILE_CHOOSER (chooser)' failed
(coot-bin:99643): Gtk-CRITICAL **: 11:52:47.895: gtk_file_chooser_set_filter:
assertion 'GTK_IS_FILE_CHOOSER (chooser)' failed
(coot-bin:99643): Gtk-CRITICAL **: 11:52:47.895: gtk_window_resize: assertion
'GTK_IS_WINDOW (window)' failed
(coot-bin:99643): Gtk-CRITICAL **: 11:52:47.895: gtk_widget_show: assertion
'GTK_IS_WIDGET (widget)' failed
Thanks,
Chen
From: Sun, Chen <su...@wustl.edu>
Date: Saturday, June 25, 2022 at 10:18 AM
To: Paul Emsley <pems...@mrc-lmb.cam.ac.uk>, COOT@JISCMAIL.AC.UK
<COOT@JISCMAIL.AC.UK>
Subject: Re: Mac Coot 1.0.06-pre mutate sequence not working
Hi Paul,
It works now. Thank you so much!
Best,
Chen
From: Mailing list for users of COOT Crystallographic Software
<COOT@JISCMAIL.AC.UK> on behalf of Paul Emsley <pems...@mrc-lmb.cam.ac.uk>
Date: Saturday, June 25, 2022 at 2:08 AM
To: COOT@JISCMAIL.AC.UK <COOT@JISCMAIL.AC.UK>
Subject: Re: Mac Coot 1.0.06-pre mutate sequence not working
* External Email - Caution *
On 25/06/2022 06:20, Paul Emsley wrote:
On 25/06/2022 04:12, Sun, Chen wrote:
I am able to run coot successfully from terminal. However, when I was trying to
mutate sequences, it reported the following error message:
debug:: safe_python_command() PyRun_SimpleString() coot.mutate_residue_range(0,
"C", 1, 2, "FF")
Traceback (most recent call last):
File "<string>", line 1, in <module>
NameError: name 'coot' is not defined
Is this my environment issue or something else? Any help would be appreciated.
I can reproduce this - I'll track it down.
OK done. Uninstall your coot and reinstall it as you did last time (using
--verbose --HEAD)
Paul.
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