One needs some help! My routine when refining is to go straight to validation. Ask for density fit for the input model(s) - I cant get this to appear at all
Then search for diff map peaks.. these are listed but the list cant be shifted and it obscure 1/3 of the map?? And just on visuals - the contouring is beautiful but unnecessarily detailed for working.. Eleanor On Wed, 15 Jul 2026 at 03:27, Paul Emsley < [email protected]> wrote: > On 08/07/2026 11:53, Noha Elshamy wrote: > > > I just downloaded Coot 1.3 today and I have a huge difficulty using it. > I was using version 0.9 without any issues (it was very useful to have the > tutorials using the older versions as I could learn a lot from them) but I > got a new Mac and I was "told" that older versions do not work on it. > I am pretty sure that Apple did it deliberately, FWIW. > > I tried using the regular mouse + drag to zoom in and out....doesn't > work, but I read the instructions and knew I had to use the keyboar > Shift + Left Mouse (I think it's left-mouse). On a MacBook Pro it's > Shift + Click+Drag (on the touchpad). > > But when I tried to do sphere refine with shift+ R....I couldn't use > the mouse to drag the atoms around as I used to. > Well, maybe Coot hadn't gone into molten zone mode? Hard to say without > terminal output or a screenshot. > > Is there anyway I can still do that? > It was my intention that you should be able to do that. > > Is there a way to change the Ramachandran plot I now get with sphere > refine to the old torsion/angles/ramachandran small menu of the old times??? > > It's on/off - do you want to turn it off? > > Also, I didn't find the old Bonds/Angles/Torsion/NBCs dialog useful, so > I removed it. > > > I know we can still do everything in Coot 1.3, but it would be really > helpful if there is a tutorial video showing how to move from the old coot > to the world of the new coot..... > > Message received. > > Paul. > > ######################################################################## > > To unsubscribe from the COOT list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 > > This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing > list hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ > ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
