Sorry to be dumb but the Fobs map is green, even though the color option appears as blue The difference map - heavens knows - it is labelled green but I cant see i And when I try to stop a map display nothing happens????
Back to coot 0.9 ..\Eleanor On Wed, 15 Jul 2026 at 12:22, Eleanor Dodson <[email protected]> wrote: > One needs some help! > My routine when refining is to go straight to validation. > Ask for density fit for the input model(s) - I cant get this to appear at > all > > Then search for diff map peaks.. these are listed but the list cant be > shifted and it obscure 1/3 of the map?? > > And just on visuals - the contouring is beautiful but > unnecessarily detailed for working.. > Eleanor > > > On Wed, 15 Jul 2026 at 03:27, Paul Emsley < > [email protected]> wrote: > >> On 08/07/2026 11:53, Noha Elshamy wrote: >> >> > I just downloaded Coot 1.3 today and I have a huge difficulty using it. >> I was using version 0.9 without any issues (it was very useful to have the >> tutorials using the older versions as I could learn a lot from them) but I >> got a new Mac and I was "told" that older versions do not work on it. >> I am pretty sure that Apple did it deliberately, FWIW. >> > I tried using the regular mouse + drag to zoom in and out....doesn't >> work, but I read the instructions and knew I had to use the keyboar >> Shift + Left Mouse (I think it's left-mouse). On a MacBook Pro it's >> Shift + Click+Drag (on the touchpad). >> > But when I tried to do sphere refine with shift+ R....I couldn't use >> the mouse to drag the atoms around as I used to. >> Well, maybe Coot hadn't gone into molten zone mode? Hard to say without >> terminal output or a screenshot. >> > Is there anyway I can still do that? >> It was my intention that you should be able to do that. >> > Is there a way to change the Ramachandran plot I now get with sphere >> refine to the old torsion/angles/ramachandran small menu of the old times??? >> >> It's on/off - do you want to turn it off? >> >> Also, I didn't find the old Bonds/Angles/Torsion/NBCs dialog useful, so >> I removed it. >> >> > I know we can still do everything in Coot 1.3, but it would be really >> helpful if there is a tutorial video showing how to move from the old coot >> to the world of the new coot..... >> >> Message received. >> >> Paul. >> >> ######################################################################## >> >> To unsubscribe from the COOT list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 >> >> This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing >> list hosted by www.jiscmail.ac.uk, terms & conditions are available at >> https://www.jiscmail.ac.uk/policyandsecurity/ >> > ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
