Oh Gawd - the list of files displayed dates back to some unknown job - it is a mess..
On Wed, 15 Jul 2026 at 12:33, Eleanor Dodson <[email protected]> wrote: > Sorry to be dumb but the Fobs map is green, even though the color option > appears as blue > The difference map - heavens knows - it is labelled green but I cant see i > And when I try to stop a map display nothing happens???? > > Back to coot 0.9 ..\Eleanor > > > On Wed, 15 Jul 2026 at 12:22, Eleanor Dodson <[email protected]> > wrote: > >> One needs some help! >> My routine when refining is to go straight to validation. >> Ask for density fit for the input model(s) - I cant get this to appear at >> all >> >> Then search for diff map peaks.. these are listed but the list cant be >> shifted and it obscure 1/3 of the map?? >> >> And just on visuals - the contouring is beautiful but >> unnecessarily detailed for working.. >> Eleanor >> >> >> On Wed, 15 Jul 2026 at 03:27, Paul Emsley < >> [email protected]> wrote: >> >>> On 08/07/2026 11:53, Noha Elshamy wrote: >>> >>> > I just downloaded Coot 1.3 today and I have a huge difficulty using >>> it. I was using version 0.9 without any issues (it was very useful to have >>> the tutorials using the older versions as I could learn a lot from them) >>> but I got a new Mac and I was "told" that older versions do not work on it. >>> I am pretty sure that Apple did it deliberately, FWIW. >>> > I tried using the regular mouse + drag to zoom in and out....doesn't >>> work, but I read the instructions and knew I had to use the keyboar >>> Shift + Left Mouse (I think it's left-mouse). On a MacBook Pro it's >>> Shift + Click+Drag (on the touchpad). >>> > But when I tried to do sphere refine with shift+ R....I couldn't use >>> the mouse to drag the atoms around as I used to. >>> Well, maybe Coot hadn't gone into molten zone mode? Hard to say without >>> terminal output or a screenshot. >>> > Is there anyway I can still do that? >>> It was my intention that you should be able to do that. >>> > Is there a way to change the Ramachandran plot I now get with sphere >>> refine to the old torsion/angles/ramachandran small menu of the old times??? >>> >>> It's on/off - do you want to turn it off? >>> >>> Also, I didn't find the old Bonds/Angles/Torsion/NBCs dialog useful, so >>> I removed it. >>> >>> > I know we can still do everything in Coot 1.3, but it would be really >>> helpful if there is a tutorial video showing how to move from the old coot >>> to the world of the new coot..... >>> >>> Message received. >>> >>> Paul. >>> >>> ######################################################################## >>> >>> To unsubscribe from the COOT list, click the following link: >>> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 >>> >>> This message was issued to members of www.jiscmail.ac.uk/COOT, a >>> mailing list hosted by www.jiscmail.ac.uk, terms & conditions are >>> available at https://www.jiscmail.ac.uk/policyandsecurity/ >>> >> ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
