Hi Julian, thanks for your detailed investigation.

On Wed, 27 Oct 2010 17:23:50 +0100, Julian Gilbey wrote:

> I'm wrong.  See the discussion in
> http://sourceforge.net/projects/mathjax/forums/forum/948701/topic/3837971
> 
> I tried the javascript command:
> javascript:alert(MathJax.OutputJax["HTML-CSS"].fontInUse)
> and received the report: TeX.  

I received the report: STIX.

> So it seems that, though the STIX fonts
> ought to be used, they're not being seen by Iceweasel/Firefox.

What comes to my mind are:
* Don't you installed beta version of STIX fonts
  by accidents?
* It will be irrelevant but aren't there any TeX fonts 
  (ttf/otf/type1 ...) which xserver or iceweasel might 
  recognize and might prevent STIX fonts to be used?
  (cm-super and lmodern are irrelevant with my check)

Regards,                    2010-10-28(Thu)

-- 
 Debian Developer - much more I18N of Debian
 Atsuhito Kohda <kohda AT debian.org>
 Department of Math., Univ. of Tokushima



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