Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
9669ed47 by Andreas Tille at 2020-02-27T01:45:31+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Wed, 26 Feb 2020 13:42:03 +0000
+Last-Update: Thu, 27 Feb 2020 01:42:03 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Wed, 26 Feb 2020 13:42:03 +0000
+Last-Update: Thu, 27 Feb 2020 01:42:03 +0000
source | version |
upstream_version | uploaders
| Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -16,7 +16,6 @@ Last-Update: Wed, 26 Feb 2020 13:42:03 +0000
biomaj3-process | 3.0.15 | 3.0.16
| Olivier Sallou
| Olivier Sallou | 2019-11-12 11:20:38+00
charls | 2.0.0 | 2.1.0
| Andreas Tille
| Andreas Tille | 2019-01-10 20:10:56+00
clonalframeml | 1.11 | 1.12
| Andreas Tille
| Andreas Tille | 2019-05-23 07:03:34+00
- cwltool | 2.0.20200126090152 |
2.0.20200224214940 | Michael R. Crusoe
| Michael R. Crusoe | 2020-02-14 12:34:12+00
dcm2niix | 1.0.20181125 |
1.0.20190902 | Ghislain Antony Vaillant
| Andreas Tille | 2019-01-30 10:04:52+00
ea-utils | 1.1.2 | 1.04.807
| Andreas Tille,Tim Booth
| Andreas Tille | 2018-04-26 21:48:01+00
elastix | 4.9.0 | 5.0.0
| Gert Wollny,Steve M. Robbins
| Andreas Tille | 2019-01-15 11:50:11+00
@@ -79,10 +78,9 @@ Last-Update: Wed, 26 Feb 2020 13:42:03 +0000
sumatra | 1.0.31 | 1.0.34
| Andreas Tille,Tim Booth
| Andreas Tille | 2018-10-16 10:06:33+00
t-coffee | 12.00.7fb08c2 |
13.41.0.28bdc39 | Andreas Tille,Steffen Moeller
| Andreas Tille | 2019-02-15 07:57:10+00
unanimity | 3.3.0 | 4.2.0
| Afif Elghraoui,Andreas Tille
| Adrian Bunk | 2019-02-06 07:34:42+00
- vg | 1.21.0 | 1.22.0
| Michael R. Crusoe
| Michael R. Crusoe | 2020-02-25 19:09:28+00
vsearch | 2.14.1 | 2.14.2
| Andreas Tille,Tim Booth
| Andreas Tille | 2019-12-17 10:07:09+00
xmedcon | 0.16.1 | 0.16.2
| Andreas Tille,Roland Marcus Rutschmann
| Andreas Tille | 2019-01-25 18:23:59+00
-(80 rows)
+(78 rows)
source | id | severity |
title
@@ -105,6 +103,7 @@ Last-Update: Wed, 26 Feb 2020 13:42:03 +0000
biojava4-live | 843712 | normal | biojava4-live: FTBFS
(failing tests)
biojava-live | 659824 | minor | biojava-live: New
version available
biomaj3 | 950914 | minor | python3-biomaj3: Depends
on python-influxdb wich ftbs, patch to remove dependency
+ brig | 952624 | serious | brig: FTBFS:
build-dependency not installable: blast2
bwa | 942447 | normal | Build bwa on ppc64el
camp | 900181 | normal | camp: FTBFS on 32bit big
endian: check metaclass->function("f4").call(object, camp::Args(1, 4,
15)).to<unsigned long>() == 20 has failed
cfflib | 936285 | serious | cfflib: Python2 removal
in sid/bullseye
@@ -150,12 +149,15 @@ Last-Update: Wed, 26 Feb 2020 13:42:03 +0000
gdcm | 749783 | normal | gdcm: Conflicting
declarations of jpeg_memory_mgr may lead to invalid function calls
gdcm | 826048 | wishlist | Faulty CMake file
impairs compiling against GDCM
gdcm | 947990 | important | gdcm: Doesn't build on
ports without java
+ gdcm | 952597 | serious | gdcm build depends on
the removed swig3.0
gemma | 952190 | serious | gemma: FTBFS:
dh_auto_test: error: make -j1 check returned exit code 2
gentle | 732691 | normal | Pressing "alignment or
Ctrl+G" only results in a dialog with a cancel button
ghmm | 936609 | normal | ghmm: Python2 removal in
sid/bullseye
gnumed-client | 936630 | serious | gnumed-client: Python2
removal in sid/bullseye
+ gnumed-client | 952633 | wishlist | gnumed-client: hints for
py3 packaging
gnumed-server | 936631 | normal | gnumed-server: Python2
removal in sid/bullseye
harvest-tools | 943055 | normal | harvest-tools: Python2
removal in sid/bullseye
+ hinge | 952615 | serious | hinge: FTBFS:
fmt.h:22:10: fatal error: spdlog/fmt/bundled/core.h: No such file or directory
htsjdk | 877590 | normal | FTBFS: error: package
org.testng does not exist
htsjdk | 920588 | normal | htsjdk: Autopkgtest for
htsjdk
htslib | 922860 | normal | Packages do not contain
the upstream README file
@@ -168,6 +170,7 @@ Last-Update: Wed, 26 Feb 2020 13:42:03 +0000
insighttoolkit4 | 853752 | wishlist | src:insighttoolkit4: Add
documentation package
insighttoolkit4 | 943677 | normal | please package
insighttoolkit5 (5.0 and 5.1 beta 1 are out)
insighttoolkit4 | 944179 | important | insighttoolkit4:
non-standard gcc/g++ used for build (gcc-8)
+ insighttoolkit4 | 952599 | serious | insighttoolkit4 build
depends on the removed swig3.0
ismrmrd | 863168 | important | ismrmrd FTBFS on armhf:
1 failure is detected in the test module "ISMRMRD Unit Tests"
jellyfish1 | 875328 | wishlist | jellyfish1: FTBFS:
__sync_val_compare_and_swap_8 undefined
khmer | 851830 | minor | arm64 has flaky tests
@@ -241,6 +244,7 @@ Last-Update: Wed, 26 Feb 2020 13:42:03 +0000
python-pbcore | 919052 | normal | python-pbcore: some docs
for pbcore are not found
python-pysam | 938092 | normal | python-pysam: Python2
removal in sid/bullseye
python-ruffus | 841073 | wishlist | python-ruffus: Needs 18
GB of RAM to build
+ python-tinyalign | 952603 | normal | python-tinyalign:
license of buildwheels.sh is CC0
q2-demux | 950933 | normal | q2-demux: FTBFS with
pandas 1.0: test failures
q2templates | 950931 | normal | q2templates: FTBFS with
pandas 1.0: test failures
q2-types | 950932 | normal | q2-types: FTBFS with
pandas 1.0: test failures
@@ -259,6 +263,7 @@ Last-Update: Wed, 26 Feb 2020 13:42:03 +0000
seqan2 | 892222 | normal | seqan2: FTBFS on hppa:
app_test_seqan_tcoffee fails on 2trx.mlcs.fasta
seqan2 | 917851 | important | seqan2 2.4.0+dfsg-9:
FTBFS, alignment problem
simpleitk | 949355 | serious | simpleitk FTBFS: test
failures
+ skesa | 952627 | serious | skesa: FTBFS: ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so:
undefined reference to `vdb_mbedtls_entropy_init'
smalr | 938500 | serious | smalr: Python2 removal
in sid/bullseye
smrtanalysis | 945737 | serious | smrtanalysis: Python2
removal in sid/bullseye
snakemake | 943956 | wishlist | snakemake: please make
the build reproducible
@@ -269,8 +274,10 @@ Last-Update: Wed, 26 Feb 2020 13:42:03 +0000
sofa-framework | 735099 | normal | sofa-framework: FTBFS on
sparc, powerpc (and ia64)
sofa-framework | 875184 | serious | [sofa-framework] Future
Qt4 removal from Buster
spades | 853113 | normal | spades: Fails to build
with unhelpful error message in a "low" memory machine
+ spdlog | 952625 | serious | libspdlog-dev: .pc
Requires: fmt which doesn't have a .pc file, breaking pkg-config on spdlog.pc
sprai | 943280 | normal | sprai: Python2 removal
in sid/bullseye
sra-sdk | 943231 | normal | sra-sdk: Python2 removal
in sid/bullseye
+ sra-sdk | 952623 | serious | sra-sdk: FTBFS: ld:
/usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to
`vdb_mbedtls_entropy_init'
sumaclust | 952093 | serious | sumaclust: FTBFS:
mtcompare_sumaclust.c:18:10: fatal error: libfasta/sequence.h: No such file or
directory
tree-puzzle | 806214 | normal | tree-puzzle: Package
fails test suite
tree-puzzle | 890790 | minor | tree-puzzle: Please
provide autopkgtest
@@ -282,5 +289,5 @@ Last-Update: Wed, 26 Feb 2020 13:42:03 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open
file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading
dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(195 rows)
+(204 rows)
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9669ed471d6804a732564c2de2b766a24d00c44e
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9669ed471d6804a732564c2de2b766a24d00c44e
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