Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
429b4247 by Andreas Tille at 2020-02-28T01:45:45+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Thu, 27 Feb 2020 13:42:04 +0000
+Last-Update: Fri, 28 Feb 2020 01:42:03 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Thu, 27 Feb 2020 13:42:04 +0000
+Last-Update: Fri, 28 Feb 2020 01:42:04 +0000
source | version |
upstream_version | uploaders
| Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -6,7 +6,6 @@ Last-Update: Thu, 27 Feb 2020 13:42:04 +0000
artemis | 17.0.1 | 18.1.0
| Andreas Tille
| Andreas Tille | 2019-02-08 11:19:24+00
atropos | 1.1.24 |
2.0.0-alpha.4 | Andreas Tille
| Steffen Moeller | 2019-11-30 12:19:31+00
baitfisher | 1.2.7+git20180107.e92dbf2 |
1.2.7+git20190123.241d060 | Olivier Sallou
| Andreas Tille | 2018-09-24 13:04:18+00
- bbmap | 38.73 | 38.79
| Andreas Tille
| Andreas Tille | 2019-11-22 21:04:16+00
beast2-mcmc | 2.6.0 | 2.6.1
| Andreas Tille,Olivier Sallou
| Andreas Tille | 2019-07-31 13:08:02+00
biobambam2 | 2.0.153 | 2.0.156+ds
| Andreas Tille
| Andreas Tille | 2020-02-05 13:20:41+00
biojava-live | 1.7.1 | 1.9.3
| Andreas Tille,Olivier Sallou,Steffen Moeller
| Andreas Tille | 2018-11-12 15:49:23+00
@@ -15,7 +14,6 @@ Last-Update: Thu, 27 Feb 2020 13:42:04 +0000
biomaj3-download | 3.1.0 | 3.1.2
| Olivier Sallou
| Olivier Sallou | 2019-11-12 13:19:24+00
biomaj3-process | 3.0.15 | 3.0.16
| Olivier Sallou
| Olivier Sallou | 2019-11-12 11:20:38+00
charls | 2.0.0 | 2.1.0
| Andreas Tille
| Andreas Tille | 2019-01-10 20:10:56+00
- clonalframeml | 1.11 | 1.12
| Andreas Tille
| Andreas Tille | 2019-05-23 07:03:34+00
dcm2niix | 1.0.20181125 |
1.0.20190902 | Ghislain Antony Vaillant
| Andreas Tille | 2019-01-30 10:04:52+00
ea-utils | 1.1.2 | 1.04.807
| Andreas Tille,Tim Booth
| Andreas Tille | 2018-04-26 21:48:01+00
elastix | 4.9.0 | 5.0.0
| Gert Wollny,Steve M. Robbins
| Andreas Tille | 2019-01-15 11:50:11+00
@@ -24,7 +22,6 @@ Last-Update: Thu, 27 Feb 2020 13:42:04 +0000
fis-gtm | 6.3-007 | 6.3-010
| Amul Shah,Andreas Tille
| Amul Shah | 2019-02-28 14:12:19+00
gatb-core | 1.4.1+git20191209.9398f28 |
1.4.1+git20200118.1dc23ff | Andreas Tille,Nadiya Sitdykova
| Michael R. Crusoe | 2020-02-17 14:52:30+00
gdcm | 3.0.4 | 3.0.5
| Gert Wollny,Sébastien Jodogne,Steve M. Robbins
| Gert Wollny | 2019-11-07 11:49:02+00
- gnumed-server | 22.8 | 22.9
| Andreas Tille,Sebastian Hilbert
| Andreas Tille | 2019-11-13 15:20:32+00
hdmf | 1.5.4 | 1.6.0
| Yaroslav Halchenko
| Yaroslav Halchenko | 2020-02-03 03:01:25+00
htsjdk | 2.18.2 | 2.21.2
| Andreas Tille,Charles Plessy,Olivier Sallou,Vincent
Danjean | Andreas Tille | 2019-03-01 22:19:40+00
hyphy | 2.5.1 | 2.5.4
| Andreas Tille
| Andreas Tille | 2020-01-07 21:19:50+00
@@ -82,7 +79,7 @@ Last-Update: Thu, 27 Feb 2020 13:42:04 +0000
unanimity | 3.3.0 | 4.2.0
| Afif Elghraoui,Andreas Tille
| Adrian Bunk | 2019-02-06 07:34:42+00
vsearch | 2.14.1 | 2.14.2
| Andreas Tille,Tim Booth
| Andreas Tille | 2019-12-17 10:07:09+00
xmedcon | 0.16.1 | 0.16.2
| Andreas Tille,Roland Marcus Rutschmann
| Andreas Tille | 2019-01-25 18:23:59+00
-(80 rows)
+(77 rows)
source | id | severity |
title
@@ -105,7 +102,6 @@ Last-Update: Thu, 27 Feb 2020 13:42:04 +0000
biojava4-live | 843712 | normal | biojava4-live: FTBFS
(failing tests)
biojava-live | 659824 | minor | biojava-live: New
version available
biomaj3 | 950914 | minor | python3-biomaj3: Depends
on python-influxdb wich ftbs, patch to remove dependency
- brig | 952624 | serious | brig: FTBFS:
build-dependency not installable: blast2
bwa | 942447 | normal | Build bwa on ppc64el
camp | 900181 | normal | camp: FTBFS on 32bit big
endian: check metaclass->function("f4").call(object, camp::Args(1, 4,
15)).to<unsigned long>() == 20 has failed
cfflib | 936285 | serious | cfflib: Python2 removal
in sid/bullseye
@@ -157,7 +153,6 @@ Last-Update: Thu, 27 Feb 2020 13:42:04 +0000
ghmm | 936609 | normal | ghmm: Python2 removal in
sid/bullseye
gnumed-client | 936630 | serious | gnumed-client: Python2
removal in sid/bullseye
gnumed-client | 952633 | wishlist | gnumed-client: hints for
py3 packaging
- gnumed-server | 936631 | normal | gnumed-server: Python2
removal in sid/bullseye
harvest-tools | 943055 | normal | harvest-tools: Python2
removal in sid/bullseye
hinge | 952615 | serious | hinge: FTBFS:
fmt.h:22:10: fatal error: spdlog/fmt/bundled/core.h: No such file or directory
htsjdk | 877590 | normal | FTBFS: error: package
org.testng does not exist
@@ -214,9 +209,7 @@ Last-Update: Thu, 27 Feb 2020 13:42:04 +0000
orthanc-webviewer | 828949 | minor | orthanc-webviewer:
"better" suggestion for cache location
paleomix | 933750 | normal | paleomix: Port to
Python3 needed
paleomix | 937232 | normal | paleomix: Python2
removal in sid/bullseye
- pbalign | 937252 | serious | pbalign: Python2 removal
in sid/bullseye
pbbam | 829741 | important | pbbam: FTBFS (32-bit):
pbmerge assertion failure
- pbbarcode | 937253 | serious | pbbarcode: Python2
removal in sid/bullseye
pbgenomicconsensus | 937255 | serious | pbgenomicconsensus:
Python2 removal in sid/bullseye
pbh5tools | 937256 | serious | pbh5tools: Python2
removal in sid/bullseye
pdb2pqr | 937262 | normal | pdb2pqr: Python2 removal
in sid/bullseye
@@ -267,7 +260,6 @@ Last-Update: Thu, 27 Feb 2020 13:42:04 +0000
simpleitk | 949355 | serious | simpleitk FTBFS: test
failures
skesa | 952627 | serious | skesa: FTBFS: ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so:
undefined reference to `vdb_mbedtls_entropy_init'
smalr | 938500 | serious | smalr: Python2 removal
in sid/bullseye
- smrtanalysis | 945737 | serious | smrtanalysis: Python2
removal in sid/bullseye
snakemake | 943956 | wishlist | snakemake: please make
the build reproducible
snap | 927011 | minor | snap: Package info
contains a 404 url
snap-aligner | 848589 | normal | snap-aligner: Build
requires 188 GB of memory (fortunately not used, just allocated)
@@ -291,5 +283,5 @@ Last-Update: Thu, 27 Feb 2020 13:42:04 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open
file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading
dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(204 rows)
+(199 rows)
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/429b424764c0488a1900f304b2bbc11f54ee9a72
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/429b424764c0488a1900f304b2bbc11f54ee9a72
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