On 07/05/13 03:37 PM, C. Titus Brown wrote: > > On May 3, 2013, at 8:31 AM, Sébastien Boisvert > <sebastien.boisver...@ulaval.ca> wrote: > >> On 02/05/13 07:49 PM, C. Titus Brown wrote: >>> Sebastian, >>> >>> I cannot find instructions for running Ray Meta. Any help? >>> >>> I've downloaded and executed Ray, and it seems to perform ok on metagenomic >>> data. Is that what I should be doing? >> >> Yes. >> >> The Ray executable is generalized to work on multi-cell single-genome samples >> and on multi-cell multiple-genome samples. >> >>> >>> thanks, >>> --titus >>> >> > > Hi Sebastian et al., > > I put together these instructions -- still a work in progress, so don't > distribute widely yet, please! > > http://ged.msu.edu/angus/2013-hmp-assembly-webinar/playing-with-assemblers.html > > Is there anything I should change about the parameters I'm using, do you > think?
I think you should use paired reads for your tutorial (you have Illumina data). Ray is much better with paired reads. > > thanks, > --titus > ------------------------------------------------------------------------------ Learn Graph Databases - Download FREE O'Reilly Book "Graph Databases" is the definitive new guide to graph databases and their applications. This 200-page book is written by three acclaimed leaders in the field. The early access version is available now. Download your free book today! http://p.sf.net/sfu/neotech_d2d_may _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
