I suspected it is enabled by default, since there is no mention on enabling it in the manual.
Is there any info that Ray will produce, that could let me know something about the possible presence of multiple genomes? For example I know I have pseudomonas contamination, it would be nice if Ray could let me know the contigs of peudomonas that correspond to a specific kmer frequency based on the coverage of the contaminant? I also fear multiple strains in my sample, some info on that might be useful. Thank you. Adrian On 7/17/2013 10:05 AM, Sébastien Boisvert wrote: > On 17/07/13 01:02 AM, Adrian Pelin wrote: >> Hello, >> > Hi, > > Ray Meta mostly refers to the changes (generalizations) that were made pour > metagenomes. > These changes are there by default and are described in our paper [1]. > > You are not the first person who is expecting an option to trigger the meta > part, > but the 2.x.y series have these changes enabled by default because they also > work > well on single genomes too. > > > > [1] http://genomebiology.com/2012/13/12/R122#sec3 > >> Does anyone know how to start Ray Meta specifically? Do you need to pass >> certain args to the Ray process? >> >> I looked in the manual, and it say that Ray Meta is included in the >> package, but does it need to be triggered somehow? >> >> Thank you, >> Adrian >> >> ------------------------------------------------------------------------------ >> See everything from the browser to the database with AppDynamics >> Get end-to-end visibility with application monitoring from AppDynamics >> Isolate bottlenecks and diagnose root cause in seconds. >> Start your free trial of AppDynamics Pro today! >> http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk >> _______________________________________________ >> Denovoassembler-users mailing list >> [email protected] >> https://lists.sourceforge.net/lists/listinfo/denovoassembler-users >> > > ------------------------------------------------------------------------------ > See everything from the browser to the database with AppDynamics > Get end-to-end visibility with application monitoring from AppDynamics > Isolate bottlenecks and diagnose root cause in seconds. > Start your free trial of AppDynamics Pro today! > http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk > _______________________________________________ > Denovoassembler-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/denovoassembler-users > ------------------------------------------------------------------------------ See everything from the browser to the database with AppDynamics Get end-to-end visibility with application monitoring from AppDynamics Isolate bottlenecks and diagnose root cause in seconds. Start your free trial of AppDynamics Pro today! http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
